Array 1 242938-241333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDG010000001.1 Salmonella enterica isolate 1342_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242937 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242876 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 242815 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 242754 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242692 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242631 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 242564 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242503 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242442 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242381 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242320 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242259 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242198 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 242137 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 242076 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 242014 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241911 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241850 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241789 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241728 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241667 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241606 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241545 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241484 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241423 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241362 29 96.6 0 A............................ | A [241335] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261051-259070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDG010000001.1 Salmonella enterica isolate 1342_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 261050 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260989 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260928 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 260867 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 260806 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260745 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 260684 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 260623 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 260562 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 260501 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 260440 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 260379 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 260318 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 260257 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 260196 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 260135 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 260074 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 260013 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259952 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259891 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259830 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259769 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259708 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 259647 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259585 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259524 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259463 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259402 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259341 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259280 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259219 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259158 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 259097 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //