Array 1 186147-183186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBK010000006.1 Salmonella enterica strain CR26 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186146 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186085 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186024 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 185963 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 185902 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 185841 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 185780 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 185719 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 185658 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 185597 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 185536 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 185475 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 185414 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185353 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185292 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185231 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185170 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185109 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185048 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 184987 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 184926 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 184865 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 184803 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 184742 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 184681 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 184620 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 184559 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 184498 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184437 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184376 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184315 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184254 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184193 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184132 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184071 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184010 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 183949 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 183887 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 183826 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 183765 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 183704 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 183643 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 183582 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 183521 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 183460 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 183399 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183337 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183276 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183215 29 96.6 0 ............T................ | A [183188] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203779-202406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBK010000006.1 Salmonella enterica strain CR26 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203778 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 203717 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 203656 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 203595 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 203534 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 203473 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 203411 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203350 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203289 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203228 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203167 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203106 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203045 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 202983 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 202922 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 202861 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 202799 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 202738 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 202677 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 202616 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 202555 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 202494 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 202433 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //