Array 1 98254-98103 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBW01000019.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3924 contig19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98253 29 100.0 32 ............................. CCAGCACCGCGCTCGCCCGCACCGGGGGTGAG 98192 29 93.1 32 ...........G.............C... CGACGGCATCTCCTCAATCAGCTCCTGCTGCC 98131 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Left flank : CTGCCTTCTCGATCGGGTCACCTCCGCGTGCGCGGGGACCACAGGGCACGACCAGTGGTTTTACCCGGCGGGGTGCGGGGTTTTACTTACTTGCGAGAACTCCAACATTTCGACCTAAAGGGTTCATTTGGGTTGGCAGTATGGTGACCCGATCACGTTACTCCTTGCAGGCGACAGTAGGCACGCGTCGTCGCCGGGGCAGCTCGCGGCCCAGCAGCCTGCCGGCCGCACGAGCCCGCCGCCCTGGGCCGTCAGACGCCGCGTCAGCCACTCCGCCAGAACCCCGGGGCGGCGCGTCATTCCCTGCCGCTGCGTGCTCTCCGCGCCAACGGAGGTAAGTCAGTGCACCAGGGCCGCATTCGCAGTAGATCGACCGCAGCCCGGGAAGCACCGCCACCGAGCCGGAGTCGATCGTCGGCGCCCGGCACCCTGCCCCCATGCACCACCAATCCGCGTATCACGAAACGCTAAAGCTCCTCTAGCGCCACAGGTCGCGAAGG # Right flank : CTCATGCTGTTAGCCGTTAACCAGTGGTTGGTGACGGCGATGAAGTGCGTGGGCGATGGGCTCGGACGTCCACAGGGCGTCCATCGGGATCGCGAGCTGTCATCGTCCACTGCGTGGGCAGTGTTTCGATCTGCCCGACCGGCCACCCGGCACCCAGGATTTGTTCGCGGACCTCACACAGTTGCGCGTGTGTTCCCACGCGCAGCCCCCATCCGGCCTTGCCGAGGGGATCGAGATCAGTGGTTGGGGCGGTAGCGGTTTCGACGATCATCAGGTGGTCATCGCCGCCGACATCGATGACTGCGATCCGAGGATCACAAGGGGTCTCGGCGCGCTCGAAGGCGAGCACTGCTCCGAGCAACTCCGTGTAGTACGCCACGAGCCGGTCGAGGTCGGTCGTGGACAGAGTCAGATGGTTGATTCCGAAGAGTTCGGGCATGGTGGGCCAACTGTAGTGCAGCCGCTGGAGGGCGCCTGGGTCGCGGTTGAGATATCACAGC # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGCCGCGGGGGTGTTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13091-13377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBW01000086.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3924 contig86.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13091 29 93.1 31 .....................G..G.... AGCCGTGTGCCTCTCGGTGCTGGCCCACGTC 13151 29 100.0 32 ............................. ACTTCGGGGTCGGCCTGGGCACAGATCGCCTC 13212 29 100.0 14 ............................. TGGCTCGGCTGGGC Deletion [13255] 13255 29 89.7 32 .....................T..G..T. GGTGCAGATCCACGGGTACGTGACGAACCTGT 13316 29 82.8 3 ...........C..C.........C..GA GCT Deletion [13348] 13348 29 72.4 0 ...T...G....GA.........AGG..G | G [13365] ========== ====== ====== ====== ============================= ================================ ================== 6 29 89.7 23 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : CACTGACCTTGGCCATGGAAGGCCCGCCAGCGCCTGACGAGGACCGGGTCCTCTCCTACCTCAAAGGAGGTGAGGAAATCTACAGCACCATGGGCGCGGAACGTGACGCCATTTCCGGAGACGAGTGGATCGGTGGCGCCGGGTCGCTGATGACGGATGGCGAATGGGTCTGGCCTGTCGAGCTCGTGCACTACCTCTCGCGTTACCACATTGCCCTTCCGGCCGATTTCCTCGAACATGTACGGAAATCCGGATACCAGGCTCCCCAAGTACCGGACGAGCGCTCCCGAGAAATCATGGCAGAAATCTTCCCCCGGCGGCCTTCCCCCTGGCAGTAGCACCCAGCACGCCGCCCGGCCCACACAGCGCTCAGTCGAGGAAAAACTCGATGTTATTGAGGTTGATCCACGTCGGCGCGAAGGCGTTGCTGTCGTGACTGTGCGAGCTGCCACCATCCAAACCGGTGGCCGCCGTACCGTCCCAGCCTCCGGAGACTGAGA # Right flank : GTTTCCTTCGGATCATCTGGCTGACCAGATGAAGATGGCGGCGAGGTGGAGTCCGGCGAGGTAGATGGTCGAGGTCTTGTCGTAGCGGGTGGCCAGGCCGCGCCACTGCTTGAGCCGGTTGATGCACCGCTCGACGACGTTGCGCTGTTTGTAGGCCTCGTGGTCGAAGGCCGGTGGACGACCGCCGCGGCTGCCGAGCCGTTTGCGGTTGGCGGCCTGGTCGGCGGGCTGCGGGATCACTGTCCGGATCCCGCGGCGCCTCAGGTGACGGCGGATCGCCCGGGACGAGTACGCCTTGTCCGCCAGGACCACGGCCGGTGCCGTGCGTGGTCTGCCTACCGGCCGGGGCACTCTGATCCGGGCCATGACCTGCTCGAAGGCGGGTGCGTCACCGGCCTGTCCCGCCGTGACGAGGAACGCGAGGGGCCGGCACCGGCCGTCGGCGGCGAGATGGACCTTCGTGGTCAGTCCGCCGCGGGAGCGTCCGAGACCATGGTCGG # Questionable array : NO Score: 4.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.97, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 130-462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBW01000063.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3924 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130 29 100.0 32 ............................. AGCTCTGCCCTGGATCTGATCGAAACGCTGCT 191 29 100.0 32 ............................. TGAAAGGAATCACCGTGTCCGGAGATCTCGTC 252 29 100.0 32 ............................. TTCCACGGATGCCGAAGCTGTGGCGGTAGCCG 313 29 93.1 33 .....................T......T CGGCCAGTCTCCACCACATTGGTGGCGCCGGCG 375 27 82.8 32 .............--......T..AA... GCTCGGGGCGTACAGGGAACGGCGGGGACCAA 434 29 79.3 0 ....C......C..C......T..GA... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 92.5 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : CCTCCCGCCTCCCGCCTCCCGCATGAATGGAGCAGCCCGCCAATGCCGAAATATATGCCTGTTATGTCGGAATCCCTGGAAGTAAGTAAAAACCCCTCCCTCGCCTGACAAAGCCGCTGGTCACGACCTG # Right flank : CCCGGTTCCTCCGGGGCACGGTGGGGTGCTGGTGCCGCCGGAGCTTAGTGATGGCCGCGGTGCGGGCGCTGGAAGTCGGGTGTCTGTCATCCGGCCGGGCCGGAGGGTCTGGTAGTGGTGTCGATGGTCAGGACGGGCGCGTGGGCGGCGAGCATGGCGAAGGTGCGGTGGTAACCGCAGGGCAGGGCGGTGATCCGGGTGGTGGAGGGGGCGTGGCCGTCTCGGGCCATGAGTCGTGCGCGTCCGCATGCGCGGGGACCACAAGCTCCTCCAGGCCTAGGACCCTGCTGCGCCGGGACCACCCCCGCGTGCGCGGGGACCACCCCGGCTCGGTGCCGAGCACCCGAACGTCCAGGGGACCACCCCCGCGTGCGCGGGGGACCACGCCTGCTTGTCTCAGGCCGGGCACCGCCGTCTGGGACCACCCCCGCGTGTGCGGGGACCACAGGCACGACCAGTGGTTTTACCCGGCGGGGTGCGGGGTTTTACTTACTTGCGAG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 908-755 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBW01000063.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3924 contig63.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 907 30 93.3 31 ...........A.................A GACGGCGGTGCCCGGCCTGAGACAAGCAGGC 846 30 96.7 31 .............................C TGGACGTTCGGGTGCTCGGCACCGAGCCGGG C [841] 784 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCTCCCCGCGCTGCGTCGGCTTACCTCCGCCTGCGCGGAGATCACCCTTCGCGACCTGCGGCGCTAGAGGAGCTTTAGCGTTTCGTGATACGCGGATTGGTGGTGTGTGGGGGCAGGGTACCGGGCGCCGACGACCGACTCCGGCTCGGTGGCGGTGCTTCCCGGGCTGCGGTCGATCTACTGCGAATGCGGCCCTGGTGCACCGGCTTACCTCCGTTCGCGCGGAGAGCACGCAGCGGCAAGGAATGACGCGCCGCCGGGGTTTTGACGGAGCGGCTGACGCAGCGCCTGACGGCCCAGGACAGCGAGCTCGTGCGGCCGGCAGGCTGCTCGGCCGCGAGCTGCCCCGGCGACGACGCATGCCTACTGTCGCCTGCAAGGAGTAACGTGATCAGGTCACCATACTGCCGGCCCAAATGAACCCTTCAGGTAGAAATGTCTGAGTTCTCGCAAGTAAGTAAAACCCCGCACCCCGCCGGGTAAAACCACTGGTCGTGCCT # Right flank : GCGCAGCAGGGTCCTAGGCCTGGAGGAGCTTGTGGTCCCCGCGCATGCGGACGCGCACGACTCATGGCCCGAGACGGCCACGCCCCCTCCACCACCCGGATCACCGCCCTGCCCTGCGGTTACCACCGCACCTTCGCCATGCTCGCCGCCCACGCGCCCGTCCTGACCATCGACACCACTACCAGACCCTCCGGCCCGGCCGGATGACAGACACCCGACTTCCAGCGCCCGCACCGCGGCCATCACTAAGCTCCGGCGGCACCAGCACCCCACCGTGCCCCGGAGGAACCGGGGGTCCAACCCCGCGCGGGCGGGGGCCACTTGGTCCCCGCCGTTCCCTGTACGCCCCGAGCGGGTTCAACCCCGCGCGCGGGGACCACCGCCGGCGCCACCAATGTGGTGGAGACTGGCCGAGGAACAACCCCGCACGCGCGGGGACCACCGGCTACCGCCACAGCTTCGGCATCCGTGGAAGGGAACAGCCCCGCACGCGCGGGGAC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8116-8386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBW01000063.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3924 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8116 29 93.1 32 ..C.........T................ TCGTAGACGATGACCTCGGCGCCCGGGACCTC 8177 29 96.6 32 .......T..................... ACGGACTGCGTGGTGCCACGCATCGCCGCACC 8238 29 96.6 32 .....................T....... TGCGGCGGCCCCTCCCTCCTCGCCATCACCGC 8299 29 100.0 32 ............................. GACCGTCTCGCCCGACGCACGGGACCGTACGG 8360 27 82.8 0 ...........A.--......T..G.... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Left flank : TCCAGTTCCTTCGGCGCGTGCATGTCGAAGAGCTTCCGCTCCTGCTCGATCCGCCGCAACATGCGGACGGGGTCCTGGCCAGCGATGTGGTCATGGGCCACCGTCGCGATCCCTACACAGCCCCGCCTCTCCAGATCTGCCCCAACGCGTGCGGAGATGATCCACAGAACCACCTTGCAGTGACCCGCGCGGCCGGTATGCCCCACTGGCCCGCGATAGTGGACATGCACGCTTCGCAACCTGCCTCTGCGCAGCCTCAGCCGCCACCTAATGCGGAGTCCGGCGGCCCAGCGCAACGGGCCGGGGGCACCGATCCGCTCGGCCGGCTCCTCGGCAGCGGGCTGCCCCGGCACGACGCATGCTTACCGTCGCCCGGACGTAGTAGCGTGATCAGGTCACTGCACTCTCATCTCGGACGAACCCTTCAGGCGGAAATGCCGGAGTTCTCGAAAGTCAGCAAAACCCCGCACCCCGCCAAGTAAAACCGCTGATCACGCCCT # Right flank : CGGCCCGCGCGGGGTTGCTCCCGCACCACCGCCCCGTACACCGGACGCAGGTACCGGCGGCGCGCGGGTGCATACCCGGTGTCCGCGGGAGGCAGCGCACCCATCAGGGGAACAGGAGCATCGACCGCGGCACAGACCAGCTCCGCAGGGTCACGCTGTCTCGCGGGTGCGGTGGAGAAAGTCTGTGGATGCTGTCGTGTACGCCGCGGGCTGACGTTGCGCAGCGAATGGTCGTTCGACCTGGGGGTTAAGCATCGGTTAGGCATCGGTGCAGGGATGTCTCAGTGTCCTTTAGGTGGCTGTTGGCGGTTTCTTGGCGCTGGTGGCGTGTGCTGTGGCTGTTCTGCTGCCGGTGCCGAAGGAGGCTTCCGATGGCCGCAGCCCGTCGAACGCGTGATCGGAGGTACCGGCGTCTGCCGCTGGATCTGGTGCGGGAGGAGTTCGCCCGCCTGGCGGACAGGCCCGGCCCGCTGGCGGTGGACGGGACGGCCTTCGCCGGT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 81331-81541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOBW01000063.1 Streptomyces rimosus subsp. rimosus strain NRRL WC-3924 contig63.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81331 29 100.0 33 ............................. TGGACGCTGGGCCTGGACCTGGTGCTGCGGGCG 81393 29 100.0 32 ............................. GACACATCCGAGCGGTCCGAGACCTCGCCCTG 81454 29 89.7 32 ..............G.........C.T.. ATCGTGAAGGAGGCGGGGGAGGTTGCCCAGGC 81515 27 82.8 0 ...T...............A--...C... | ========== ====== ====== ====== ============================= ================================= ================== 4 29 93.1 33 GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Left flank : CGCCTGCTGCCCCGCATCGTCCGCGATACCCAGCACCTCCTCACCCCAGAAGCCAACACCGCTACCGACCACAGCGAACGCCACGACATCGATATGGTGCACCTCTGGGACCCCAAAAAGGGCGTTCTGCCCGCCGGAGTCAACTACGCCGGCGGCGACCGCTGATGCCTTCCCTGCTCGTCATCGCCACCACAGCCGTCCCCGACCATCTCCGAGGCGCCCTCAGCCGCTGGACCAGCGAAGTCGTCCCAGGCATCTTCGTCGGCGCCGTATCCGCCCGCGTCCGCGACCAACTCTGGCAAGCCGTCACCGAAACCGTCGGAGACGGCGCCGCCCTCCTCGTCCACCCTGCCGACACCGAACAGGGCTACGCCATCCGCACCGCAGGCACCCGCCGCCGTACCCCCATCGACTTCGACGGCCTCACTCTCATCCGCATGACCGGCACACACAAGGCAAAGAACGAGCAAATCCCCCTTTAAGTCGCAGGTCAGGAAGGG # Right flank : GGACGCGAGAACGGCGTTTCGGCTGACGTCGGAGATCTCGCCAGACGCCCTCTGGCGTGACGGTGACCGGAACGCACCCCAGGCGCGATGCTGTAGGGGCTACGCGATCCCCGAGCGCCTTCCCCTCATCACCCGAGCGGAGGAAAGCAGCGGTCTCGGGCACACCGACGAGCGAAACCCGCACAGCCTAGGAGGGCCTAACGGTCACATGAGGCATCGCACAATCCAGCGCCAACCAGGGTCGTACGTCAGGGCAGCTCAGAGCCCAAGGTCCCAGCCGTATTTGCTGCTGATGCGGCCGGTGGCGATGTGGCGCAGCGCGGCGGCGTGGTAGGGGACGGTCTGCTCAGGGATGCCGTCGAAAGGGAACCAGGAGATGCCGCCGCATTTGTCGGGCTCGGCGTTGTACGGTTCGCCGTCCAGGAGTGGGCCCGGTAGAAGATGCCGAAGCGGGGGTCTTCTCCGGGGGCGCGGTGGTCGATGACGTGGGCGAGTTCGAG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //