Array 1 32-1803 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVC01000033.1 Acinetobacter baumannii strain AC001-8-R1-S1 Ab_BS322_Contig016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 32 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 92 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 152 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 212 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 272 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 332 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 392 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 452 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 512 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 572 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 632 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 692 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 752 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 813 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 873 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 933 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 993 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 1053 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 1113 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 1173 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 1233 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 1294 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 1354 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 1414 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 1474 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 1534 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 1594 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 1654 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 1714 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 1774 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 30 30 94.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TACATGCCCACGTTGAAAATCGGGTACCAGTG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 109929-111336 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVC01000009.1 Acinetobacter baumannii strain AC001-8-R1-S1 Ab_BS322_Contig009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 109929 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 109989 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 110049 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 110109 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 110169 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 110229 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 110289 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 110349 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 110409 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 110469 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 110529 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 110589 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 110649 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 110709 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 110769 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 110829 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 110889 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 110949 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 111009 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 111069 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 111129 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 111189 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 111249 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 111309 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ============================== ================== 24 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : A # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //