Array 1 62688-60200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACMM010000020.1 Vibrio cholerae strain PivertFAT2Aug 48410_530_Vc_PivertFAT2Aug_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62687 28 100.0 32 ............................ TTGCTCCGCATTGGGATCGATTTCAATCAGCG 62627 28 100.0 32 ............................ GTGACAAAATGCTGCGCAGAATTGGTGCTCAA 62567 28 100.0 32 ............................ ATTAACCGCTGAAAGAATGCCTCATAGTCAGC 62507 28 100.0 32 ............................ AGAGACGTGAAAAGCTGGCTCACTAGTTTCTG 62447 28 100.0 33 ............................ ACGAAAAGGTAAAGTTGCTAGCGGACAATGTTC 62386 28 100.0 32 ............................ TGTAAGCCCCATCGATAACATCGATGTGTTCC 62326 28 100.0 32 ............................ ATTACGACCGTTGGCCAGATGACATTGATGGT 62266 28 100.0 32 ............................ ACAGCAAGCCACGCTAGCCGGGGTGAGTGAAG 62206 28 100.0 32 ............................ ACCATGATTATGGCAAGGACAGCTACTATTCC 62146 28 100.0 32 ............................ AAGCAGCTTTAGCACTCGCAGAAGTTCGCTTG 62086 28 100.0 32 ............................ TTAAGCAACACACCTATAATTAAAAAATAGTT 62026 28 100.0 32 ............................ GGCAGATTCGAGCGCACCCCAGAAAAACTTAT 61966 28 100.0 32 ............................ CTTACGAGCACCACCATGAGAATGATTAGTGT 61906 28 100.0 31 ............................ TTAAATGCAAATGCCCGTTACTTACTGCGGT 61847 28 100.0 32 ............................ GCTTTGATAGCAACCGTTATGTCCATGCCCTT 61787 28 100.0 32 ............................ CTATAGATAACGGGTAAAACGCTTGGAAAAAC 61727 28 100.0 32 ............................ GCTTTCAGTCTCGCCACTCTCTCAGCTACCCA 61667 28 100.0 32 ............................ CATAAGCTTCAAAGCTTCGGTTTGATTCTTAC 61607 28 100.0 32 ............................ AGAGGAGGCGTTTGCCGAGCTGGGCGTAAATG 61547 28 100.0 32 ............................ ATATAGATCCGGTTGTGTTTGTTGCCTAGTGA 61487 28 100.0 32 ............................ AACAACGCAAACCATCACAACAGAGCAGGTAT 61427 28 100.0 32 ............................ CCTACCTTCTTGTATTCTGGAATTAAGTCATG 61367 28 100.0 32 ............................ ACTTGAAGAGGAGCTTATTGAGAAGCGCCATT 61307 28 100.0 32 ............................ AAATATACAAAGTCGTTCCTGTTTTGTTCTGT 61247 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 61187 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 61127 28 100.0 32 ............................ AAAGCGATCAGAGTTTATGATGTGAACTTTTT 61067 28 100.0 32 ............................ TCGCTGAGCGATCACAAGAAACCAAAAACGAA 61007 28 96.4 32 ...........T................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 60947 28 96.4 32 ...........T................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 60887 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 60827 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 60767 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 60707 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 60647 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 60587 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 60527 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 60467 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 60407 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 60347 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 60287 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 60227 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 42 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //