Array 1 88302-90343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRW01000017.1 Salmonella enterica strain CVM 43805 43805_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88302 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88363 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88424 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88485 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 88546 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 88607 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 88668 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88729 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88790 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88851 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88912 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88973 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 89034 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 89095 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 89156 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89217 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89278 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89339 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89400 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89461 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89522 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89583 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89644 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89705 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89766 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89828 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89889 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89950 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 90011 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 90072 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 90133 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 90194 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90255 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90316 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106476-107280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRW01000017.1 Salmonella enterica strain CVM 43805 43805_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106476 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106537 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106598 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106659 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106720 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106782 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106885 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106946 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107007 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107068 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107129 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107190 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107251 29 96.6 0 A............................ | A [107277] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //