Array 1 4675-4220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000244.1 Streptomyces anulatus strain SID9598 contig-5000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4674 29 100.0 32 ............................. GCCCCCAAGAAGCGCCCGCCGAACAACAGGTC 4613 29 100.0 32 ............................. TGCCCCTCCCCCTGCGGCGGTTGGTGCCCTCC 4552 29 100.0 32 ............................. GAGCGGCGTATCCGGCGGGCTCGCCGACGGGT 4491 29 100.0 32 ............................. TGGCGGGCGTCGGGGGCGATCTCCGGGCCACG 4430 29 100.0 32 ............................. AGGAGAATCGCCCGTGCGCACATACTCACGGG 4369 29 100.0 32 ............................. CATCTGACTTGGCTCCGTGACTTACTTTGAAG 4308 29 100.0 32 ............................. TACGAGATGCTTCTGCCGCTGGGCCTGCTCCT 4247 28 86.2 0 .....................G..A-..G | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : TGGTGACCGTCATCGTCCTCACCAACTGCCCGGTCGGCCTCAGGGGCTTCCTCACCCGCTGGCTGCTGGAAATCTCCCCGGGCGTCTTCCTAGGCTCTCCGTCCACCCGCATGCGCGACCTCCTGTGGGCCGAAGTCCGCGAGTACGCCGGCCAGGGCCGCGCCCTGCTCGCCTACCAGACGGACAACGAGCAGGGCTACACCTTCAAAACCCACGACCACTCCTGGCACCCGACCGACCACGAGGGCCTCACCCTGATCCACCGCCCGAGCATCCACGCCCGGCGGGCGGGCAGTCCGGAGAGCGCGGTGACCGACGTTCCCCAACAGGGCTGGAGCAAGGCGTCGAAACGACGGAGGTTCGGGGGCAGAAGGTAGGTGCGGCTTCGAGAGCTGGGTCAGGTCGGCGTGCACCACTGGACAGGAGAGCCCTTTATGTCCGATTTCAAAGAAGTGGGTAAAAACAGGCTCCTGCCCGCGTAGAACACCAGGTCAATGACT # Right flank : TCAGCTCGCAGAGCCCTCGAACGGGTGACAGACGTGGTTCCCGCAGGCCCGCTGGTTGCGCGCCACCACGGCGGGATGCGTCACAGACCTGTCTCGGACCTTGACGGAAGCAGGATGTAATGACCAGTGCGCCGGACTACAGCCAAGGCATCGACACCGAGCGCGCCCTTAAGTTCGCTGTGCAGCGCATTCGCGGGGACCGTGTCCAGATCGTTGAGGGGATCATCGAACCGGTGTCACCGACGTGGGACCACGAGCGCGCTGCCAAGCTCGTACGCCGCCAGATCGAGAGGCGAGTCGACGAGCTCGGGTGCGTGGAAGGGTCCGGGAATCTGGACCTGCCCGGGTCCTCGAACTGGTATGTCCCGGACATCGCCGTTGTGCCGGAGGATCTGGCCAAAGGAGGCAGCGCCCTGCTTCCCGACCAGACGCTGCTGATCGTAGAAGTGACATCCGAGTCGAACGCGGAGACGGACCGGGTCGTCAAGCGACGTAGGTAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16159-14729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000244.1 Streptomyces anulatus strain SID9598 contig-5000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16158 29 93.1 32 .....................G..G.... TGCGCGGCGAACCCGCGCAGCTCCCGGCCGGC 16097 29 93.1 32 .....................G..G.... GGCCTCCCACTCCCGCAGGACGCGGTCGCGGT 16036 29 93.1 32 .....................G..G.... GCGCACGCGGCGAGGTAGGCGATGGGGGCGAC 15975 29 100.0 32 ............................. TGGCGGCGATCCGCAGGGAGCTGGGGAACCTG 15914 29 96.6 32 ............................T CTCGGCGGACCACTCCGGGTGGTCCGTGCGCT 15853 29 100.0 32 ............................. ACAGTCTCGGGACGCACCTACCGCCGGACCCG 15792 29 100.0 32 ............................. CGTGCGGAAGCTCCCCGGTGGGTGAAACGGCC 15731 29 100.0 32 ............................. CTGGCGTGGAAAGACCGCCCCTTGAGGACGGT 15670 29 100.0 32 ............................. CCGGTGCGCCGGAGGGCCGAGGGCCGGAGGGT 15609 29 100.0 32 ............................. GTCGACAACGGCGGCTCGCTCAAGTCGCCGAT 15548 29 100.0 32 ............................. TTCTCCACGGACTTGTGGTTGCCAGCCTTGTA 15487 29 100.0 32 ............................. CCGAGTGCGTTCCGATAAGCGCGGTCCCTGAC 15426 29 100.0 32 ............................. TCGCCCTGAGACGCCATGGTGGCGTCCGAGAT 15365 29 100.0 32 ............................. ACCTCGCGGCCCGTCCGGTGACGGCGGGCGAG 15304 29 100.0 32 ............................. GACGTCGCCAGGGCAGTCCTTGGTACAGCGGA 15243 29 100.0 32 ............................. GTGGCGCGACCTGCGGGCCCGGTGCCCATGGA 15182 29 100.0 32 ............................. GAGTCGGATCAGTGGTCGTCGTCGGATCTGGT 15121 29 100.0 32 ............................. CCGTCCTGCGCCGCATCCTCTGTCGGCTCCTT 15060 29 100.0 32 ............................. TCGTCCCCGTGCACGCCCCGGTTGGCCCGGCG 14999 29 100.0 32 ............................. TTCGGAGACATCGAAGTTTCCTTTGCCGGGAG 14938 29 93.1 32 ..............C..A........... AGCTTCCAGGTCCCGGACGCGTCCAGGACCAT 14877 29 93.1 32 ....AT....................... TGACCGTTGTTGTCCTCGTCGAGCTCGATGTC 14816 29 96.6 32 ...........A................. GTCCAGTACGGGCTGGCCGAGCTCCGGCGCGA 14755 27 89.7 0 ....................--...A... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 97.8 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : AACCGCAGGTCACGAAC # Right flank : CTGATCCGAAGGATTGCCGGTTTGGTAAACCGGCGTGGCCCCTGCGCCAGCGGGGCACCCCGGAGTCAAGTAGCGCTGCATAGAGCACAGTTGAAGCTCGCGCGAAATGGCACCCGCACTACTACAGCTCCCGCCACGCCCCACACTCCGCGAGTCGACCGGCGGAGCCCGGCAACCAGGCCCACCGTCGGCTCCAGGTTGCACACCAAGCCCCGGCGCACGTCAGCAGATCACTCTCCCCTCGGTCACTCTCGGTCAAATAGGCGCACTTGCGTTCACCTTCGACCATTGCAACCGCCGTATGGCTTCGACGATGTCCAATACGCCCATGAGCCGCGATGATCCGGAAAGCCTGTCGGCTTACGCCCACCTGTCCCCCACCTCCCGCACCGCCTGGGGCAAGCACGACCGGCAGACCGAACAGTGGCTCCCCCTCTGGCGGCACATGGCGGACAGCGCCGCCGTGGCAGGTCGGCTCTGGGACGAGTGGCTGCCCGACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1-274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000358.1 Streptomyces anulatus strain SID9598 contig-5000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 33 ............................. ATCACCGTGCCGGGCGCCGGGGCGGGGGGCGCC 63 29 96.6 32 ............................A AGGCCCGCCAGCGCGCGGCGCACCGGGGCCTG 124 29 100.0 32 ............................. CTCGGCGGGCTCGGCTCGGCCCTCGGCATGTC 185 29 100.0 32 ............................. CAGCCCTTGGACTTCTTCGCGGCCTTGTCGGC 246 29 93.1 0 .....................G..G.... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.9 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : | # Right flank : CGACTTCCAGTCGTTGGCGGTCGCCGCTTTCCGCAGGGTGTTACGGGACAGCCCTCAATCGGGGCGTTGAGCGCGCACGAGCAGTGTGCCCAGGCCTACTGCGTCCGGGGCGGGCAGGACGTGAGCTTCGATGCCGATGAAGCCGTGGCGCTTCAGGAGGTCTGCCCATGCTTCGGGCGGGTACTGCCAGCGCAGCACGGTTAGTTCGCGTTCCCGTCCTTCGAGCCATTTGCCGCGCATCGGCTGCGGGCCGTACGCACCGAGGGTGGGCTCGGCCTGGCTGAAAGCGAAGACTCCGCCGGGTGCGAGGCTCTTTGCGAGGAGAGGGAAGAGGATCTCCGGGTCGGTGAACCACACCGCACCCCAAACGAAGTAGATCGCGTCGTAGGGTGCCGTGTTGGAAGCGAGGTGGTCGCACACGTCCGCGTGGAGGAACGACAGGCCCGGAACGTCCTTCCACCATCTGCGGGCGCGTTCGACCTGGGCGGCGGAAAAGTCCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 213-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010001090.1 Streptomyces anulatus strain SID9598 contig-8000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 212 29 100.0 32 ............................. TGCGCGGCGAACCCGCGCAGCTCCCGGCCGGC 151 29 100.0 32 ............................. GGCCTCCCACTCCCGCAGGACGCGGTCGCGGT 90 29 100.0 32 ............................. GCGCACGCGGCGAGGTAGGCGATGGGGGCGAC 29 29 93.1 0 .....................T..T.... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGCCCACCGCCGGAAGCCCCTCGCCCGACGCACCGACCCCCGCCCACCACCTCCTTGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCATGGACAGAGAGAACTCGCCCCACCCCACCGACATCGCCCACGTCAAAGCACACATGAGCAACCTCCGGGGCCTGCTCAAACCCGTCTGAGTGCGACAGTGCGGCACACGTCACGGCTCCGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACACCCCTCGGTACGGGACGATCACGACCCTTGCCTTCAGAACGCCACCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTCTAGAGCTACGAGCAGAACCGCTCACAACCCAGGGCGCGATATGCCCTTTTCTCCGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAAAACCGCAGGTCACGAACT # Right flank : C # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1480-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000625.1 Streptomyces anulatus strain SID9598 contig-9000016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1479 29 100.0 32 ............................. GCAAAGACGATCGACAAGGTCGCGGCGGGCGG 1418 29 100.0 32 ............................. GACGAGACGCCCCTCGGCGCCACCACGGCCAG 1357 29 100.0 32 ............................. GACACCGCCACCCTGATGCGGGGTGCCCGCCG 1296 29 100.0 32 ............................. ATCCCGAGCGCGGGCAGGTCACCTCACTCTCC 1235 29 100.0 32 ............................. AGGACCAGCAGCACCAGGGCTGCGGCAATCAG 1174 29 96.6 32 ............................T ACGGCAGTCGCCTGCACCGGTAGTGGCTTCAC 1113 29 100.0 32 ............................. CGCAGGGCGGCGAGGAGCACTCGGATCATCGG 1052 29 100.0 32 ............................. GCACCACTCCGCATCGAACCCGAGGGCGGCAA 991 29 100.0 32 ............................. TGAACAGCGTGCCTAGAAACAACGCAGGCAAC 930 29 100.0 15 ............................. ATCCGGGCCACGAGG Deletion [887] 886 29 72.4 32 A..AA.GGAA.A................. CGCCTGTGCCAGGGATGCGGAGAGCCCGCCGA G,A [872,880] 823 29 100.0 32 ............................. CCGACGTCGATCACACCTGGGAGACAGGAGTC 762 29 100.0 32 ............................. ATCCTGGCCGGGATGGCCCGGCAGATGCTTTA 701 29 100.0 32 ............................. AGCATGCGTGAGCGTGCGTCTTCGAGGTCCTT 640 29 100.0 32 ............................. CGTATCCAGATGGCTGCTGCTGCGGCCGGTGT 579 29 100.0 32 ............................. GCGGTACGACTCGCCGTCGAATTCCTTGCCAG 518 29 100.0 32 ............................. TTGGGCAACATCCTGCGGGAGACCAGCTACCC 457 29 100.0 32 ............................. GACACGGCTGAGGCCGTCTTGGAGCACGGTCT 396 29 100.0 32 ............................. GTGTCCGCCATGTCATCGGCGCGCGGACCCAT 335 29 100.0 32 ............................. AGGCCGTGCCGCCACCGGTGTTGCCATACCGG 274 29 100.0 32 ............................. GGTGGCTCCGTCGCGGCGCTCCGTGCCATCGA 213 29 100.0 33 ............................. ATCACCGTGCCGGGCGCCGGGGCGGGGGGCGCC 151 29 96.6 32 ............................A AGGCCCGCCAGCGCGCGGCGCACCGGGGCCTG 90 29 100.0 32 ............................. CTCGGCGGGCTCGGCTCGGCCCTCGGCATGTC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.6 31 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : ACCCCGGCTGCCCACGACCGGAAGCCCCTCGCCCGGCGCACCGACCCCCGCCCACCACCTCCTTGTGGAATGCACCGACTGCGGACGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCGTGGACAGAGAGAACTCGCCCCACCCCGCCGACATCGCCGACGTCAAAGCACACATGAGCAACCTCCGCGACCTGCTCAAGCCCGTCTAAGTGCGGCACGCGTCACGGCTCTGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACGCCCCTCGGTACGGGACGATCACGCCCCTTGCTTTCACAACGCCGCCTCTGGCAGCCCGCAAAGGGCAGAATGAATCCCGACGTTTAGAGCGACGAGCAGAACCGCTCACAACCCAGGGGGCGATATGTCCTTTTCTCTGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : C # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14108-14259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000286.1 Streptomyces anulatus strain SID9598 contig-17000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14108 29 100.0 32 ............................. CAGTGGTCACAGGCGGGATGCAGTTCACCGAA 14169 29 100.0 32 ............................. GGCTGGGTCCCCGGACCCATTCCGGGAGCAGG 14230 29 82.8 0 .....................GG.G.GG. | C [14247] ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Left flank : CGCCCCGGCTGCCCACGACCGGAAACCCCCCGCCCGCCGCACCGACCCCCGCCCACCACCTCCTTGTGGAATGCACCGACTGCGGCCGCCCCGGACCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAGCCCACTCCGGCTCCATGGACAGAGAGAGCTCGCCCCACCCCGCCGAGATCGCCGACGTCAAGGCACACATGAGCAACCTCCGGGGCCTGCTCAAGCCCGTCTAAGTGCGGCACGCGTCACGGCTCCGGCATACAGAAGCCATGAGCGAGCTGCACCCACCGAAACGAACACCCCGCAGTACGGGACGATCACGACCCTTGCCTTCAGAACGCCGCCTCTGGCCGCCCGCAAAGGGCAGAATGAATCCCGACGTTCAGAGCTACGAGCAGAACCGCTCACAACCCAGGGGCAATATGTCCTTTTCTCTGAAGCTTGCCGAAAAGCACCACTCGCCTGCATAGAACCGCAGGTCACGAACT # Right flank : CCCCCTCCGGTCGTCCGGAGTCGCCGGCATCTACAACATCTCCACCCTGGCCGCCCACCGCCGGCGCGGCTACGGCGGTGCCATCACGCTCGCGGCCCTCCGCACGGCCCGCGAGTGAGACCACCGCATCGCGGTCCTGCAGGCATCGGGTGACGGCGAGCCCGTCTACCGCCGCCTGGGGTTCCGCTCTTGCGGCCAGTTCACCGAACATGCCGTCAACCCCTGAACCGCTAAGGCTCCACTGACCGTCCGTCCGCCATTCCTGAATGGGCCGGTCACAGCCACTCATTGATGGCCGCTACGAGGACAGTGGCCCTTCCCAGCCTGTGATCGCGGGGCTCGGTGAACACACCGTCCGACGGTTCCTTCCGCAGGTCACCCCGTTTGCGGGCCCCGGGCCTCGGTCCTAGTTACCTCGTTGTGTGTACGCCCCTTGCGGCCGATCATGGGTGTCGGACCAGCAAGGAGGAACAGGATGGGGCTCATGCTCTCCCCCGGCG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3550-2724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000190.1 Streptomyces anulatus strain SID9598 contig-1000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 3549 33 90.9 28 .............................GAC. CGATCTGCGCAGGGCCTCGATCGGCCCG 3488 33 100.0 28 ................................. CAGCGGCAAGACCGACGCCCAGGGGCAG 3427 33 90.9 28 ..............................CAA TCGGTGTAGGCACGGGCGTGGGGCAGGT 3366 33 90.9 28 .............................TC.G TGGCGGCGAGGATTTGTTCGACGGTGCC 3305 33 90.9 28 .............................TGA. CCCTTCAGCTCCTTGCCTCGAACTCACA 3244 33 97.0 26 ..............................G.. TGGAGCCGCGTTCACACGTACTACCG AG [3214] 3183 33 93.9 28 ..............................C.A GGATTGCGGCCACGTCCGACCCGCCGAT 3122 33 97.0 28 ..............................A.. TCGACGCGCACACCGAAGACCTCCTCGC 3061 33 90.9 28 .............................AG.A CGGGGGCTGTCGACGCGGAAGCGTTCGA 3000 33 97.0 27 ..............................C.. CGGGTACCTCGACGTGGAGGTGCAGGC G [2972] 2939 33 93.9 28 .............................A..A GCGGTCGCAGCCGTGCCTTCGTGAATTC 2878 33 90.9 28 ............................AG.C. GTGGCACTGCTGGACCTCATGCGCCATC 2817 33 87.9 28 ........................C....ACC. GGGCGCCGCCGTCGCGCCGGTTCGGCGC 2756 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================ ================== 14 33 93.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGC # Left flank : CCAGCACACAGGCCGACGAGCGCCCGAGCGCGATCCGGTTCCCCGGCCAAGCCCATCCCATCAGCTATACGCGCCCTCTGGTTCTCCGCCAGATAAACGTCCCACAAGTGGAGCGCCATCGCGGCGGCGTCGAGAAGATGCCTCACCAGCGGGTAGGGAGGAAGTGCCGGATCCAGCCCCCGAGCCTTTCCCCACACCGACTCATCCACCACGCTCCGCCCATGCGCCACGCCAGCCCCCTCCGCTCCACCACTCGAACCTGATCCGGCAACGGAAGCGAAACCGCCACCCATCGCATACAAGCACCCAGCACTGACATTGATATCGCTACTCGCGTACCGACGGCCGTTCCACGATCAGCAACGGGGCGCGGTCCTCGCCTTGGCGACCTTGCATGCTTCAGCTGGATAGAGTGACGGCATGCGTCTGACTGAGCGTCTCACCCCCTCAAGAATGGCAAAGAATATGCAAAGCCCTTCTTAAGGCGCAGGTCAGGAAGT # Right flank : GCAGGTGGCTGAGCGGGACCGCTCAGCCACCACGAAGTTCCCGGCATTCTCCCGCACCCGTAGTGCACACGACCCAAACCTGCAGGTCAGGCATCCTTTGCGACGGGTTCCAGGATCGCCACACACTCCACATGATGCGTCATCGGGAACAGGTAGATGGCCGTCACGCACCTGTATCGGTGCCTGGACCGAGCGACTTCGTCAGCCGAGGGCGGGGATGACGGTGGAGCCGTAGGCGTCGATGGTGTTCTCGCGGTTGTCGTGCATGTCGTAGACGGCAAACTGGTCGACGCCCAGGGACTTCAGGTGGCGCAGCTTCTCCACGTGGGCCTCGGCCGGGCCCAGGAGGCAGAAACGGTCGACGATCTCGTCGGGGACGAAGGCGGTGTCCGGGTTGCCGGCGCGGCCGTGATGGCCGTAGTCGTAGCCCTGCCGGTCCTTGATGTACGCCGTCAGCTCCTCGGGGACCATCGAGGAGTGTTCGCCGTACTTGGCGACGA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13444-13716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGNH010000190.1 Streptomyces anulatus strain SID9598 contig-1000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13444 29 100.0 32 ............................. CACTGGAATTCTGGTGAGAACGCTACCGACGG 13505 29 100.0 32 ............................. CCGAGGAGCGCGTCGACCGCGTCCGGCAGGTC 13566 29 100.0 32 ............................. ACGGTCGAGGACGCCCGCGCGGTGTGGCGCCG 13627 29 96.6 32 .......................A..... TCCACGATGGAGCGGTACCGGGCCGAGCTGAC 13688 29 89.7 0 .........A..............CC... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : TCCCGCGCATCGTCCAGGACGTCCAGAGCCTCCTGACGCCACGCTCCACGGATGCCACGGACGAAGACGAGCCACAGGAGAAGCGCGACGTCCGACTGGTCCACCTCTGGGACCCCAAGAGCGGCACCCTTCCTGCGGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCATGCTCGTGATAGCCACCACGGCCGTTCCTGATCACCTCCGCGGAGCACTCAGCCGTTGGACCAGTGAGGTCGTCCCCGGCATCTTCGTCGGGAGTGTCTCCGCCCGCGTCCGCGACCAACTTTGGCAAGCCGTCACCGAGACCGTGGGCGACGGTGCCGCCGTCATCGTCCACCCCGCCCCCACCGAACAGGGCTACGCCATCCGAACCGCCGGCACCCGTCGCCGCGTACCCGCCGACTTCGACGGGCTTACCCGATCCGTATGACCGCTGCACCAAAGGTAAAGGGAATGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : GATTACTAGCTGGAAGAGACCAGCTGGCGCTGTGACCCGGCGCGATGAGGAGGTCTTGCTCGCTGGCCTACGCAAATAGTCTTTCGATTGTTGCCGGCTCATGCCAATTGATGGAGCTGGAAGTCCCAGAAAAGGCCCAGGGGATTCCTACGGCTGACGGCGCCTTTTCGGTTCTCCCCGACGTAGGACGGAGCGTCGACACCGGGACCTGTGCGCTGGGGGTCGCCTTGATCGAACGGCAGCACGGCCTCCCCGGATCGCTTGCCCGTCGGCTACGTCGGCGCGAGAATTTCCGTCACACCCGCGACGAACGCCTGCACCTCCTGCCAGGCCGTGTTGTGCGGTTCCTGGGGGCCACTACCTGGTCAAGCTATGCGCCGTGCAGCTCACCCAACCGGCGGGAAGGTCGAAGCGGCCCCGGCGATCCCGGGCCGGAGCGGATTGCGGCCCTGTCGAGGGCCGTTTCAAGGCGGCGGAGCTTGTGATCTCGATCGTCGAAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //