Array 1 233474-231674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSF01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 61 NODE_2_length_674373_cov_16.0166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233473 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 233412 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 233351 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 233290 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 233229 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 233168 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 233107 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 233046 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 232985 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 232924 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 232863 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 232802 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 232741 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 232680 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 232619 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 232558 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 232497 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 232436 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 232375 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 232314 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 232253 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 232192 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 232131 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 232070 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 232009 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 231948 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 231887 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 231826 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 231765 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 231703 29 86.2 0 TAA.........T................ | A [231676] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 250187-249610 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSF01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain 61 NODE_2_length_674373_cov_16.0166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 250186 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 250125 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 250064 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 250003 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 249942 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 249881 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 249820 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 249759 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 249698 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 249637 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //