Array 1 56-323 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJX01000023.1 Pseudomonas aeruginosa strain Pae66 23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56 28 100.0 32 ............................ AAGAAGATGAACCGCGACGACCACCGATAGGA 116 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 176 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 236 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 296 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTGCCGTATAGGCAGCTAAGAAACGTATCAGCGGGCCGCCAATGAAACCGTCGAGG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-746 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJX01000033.1 Pseudomonas aeruginosa strain Pae66 33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 25 89.3 32 ---......................... TGGAGTAAGGCTGGGCAGGAAAACTTCTGGCT 58 28 100.0 32 ............................ CAGACATGCTTAAGGGGGAGGCAGCATGAACA 118 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 178 28 100.0 32 ............................ TCGATGCCCGGCCAGGGTGCCCCCGCTTTCGC 238 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 298 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 358 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 418 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 478 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 538 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 598 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 658 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 719 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10850-9621 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJX01000033.1 Pseudomonas aeruginosa strain Pae66 33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10849 28 100.0 32 ............................ TACGAGAAAACGTTCGACAACACCATTCCCGC 10789 28 100.0 32 ............................ TACTCGGTGGCGGTGCTGCTGGCGGCACTGGC 10729 28 100.0 32 ............................ TGGGAGTTCGTCATGCTCTTCAGGGCTTCGAT 10669 28 100.0 32 ............................ ATCGAGCGGGAAGATGCAGACGGCATCACGCT 10609 28 100.0 32 ............................ TGGAGCGAACCGATCAGCTACCGCGACTTCGC 10549 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 10489 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10429 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10369 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 10309 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 10248 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 10188 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 10128 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 10068 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 10008 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 9948 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 9888 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 9828 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 9768 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9708 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9648 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 261-769 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJX01000061.1 Pseudomonas aeruginosa strain Pae66 61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 261 28 100.0 33 ............................ CCCTGGGCGGCTGCGCTAACGTAATCCCATCGT 322 28 100.0 32 ............................ AAGCAGCACTACAGGCTTCCCATGAAGAAAAC 382 28 100.0 32 ............................ CGCCATCACCACCGCCACCCGTGCCGCTGCCA 442 28 100.0 32 ............................ AGTGCCAACGACCACACTGACAAGGCCGTGGC 502 28 100.0 32 ............................ ACCGGCTTCGGCACTTGGAACCCCGGAAAGGT 562 28 100.0 32 ............................ TCGACCGACTCTCCGCCGGCTCTCCTGATGAA 622 28 100.0 32 ............................ TCTCAATCCGGTGAGCAGCGTCCCGCCAAAAA 682 28 100.0 32 ............................ AGAACACATCGGGAAAGCTGGAGAACTGGCAT 742 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTAG # Right flank : AGAGCGCTCTGGTGGACGGCTGGGTACGACGAGTTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 188-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJX01000073.1 Pseudomonas aeruginosa strain Pae66 73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 187 28 100.0 32 ............................ GTCGTGGGCTCCTACCGTGGTGACGTTGCAAC 127 28 100.0 32 ............................ AAACACTCCAGCCAGCGCGCTCGCCAGAGTGC 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : AAATAAAGAGAAGCGGGACAAGCTGAACCGGGAGGTTCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //