Array 1 340614-341923 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROI01000026.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001344 CFSAN001344_contig0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340614 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340675 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340736 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340797 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340858 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 340919 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 340980 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 341041 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 341102 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 341163 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 341224 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341285 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341346 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341407 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341468 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341529 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG C [341534] 341591 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341652 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341713 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341774 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341835 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341896 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358547-361078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROI01000026.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001344 CFSAN001344_contig0025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358547 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358608 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358669 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358730 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 358791 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 358852 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 358913 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 358974 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 359035 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 359096 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 359157 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 359218 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 359279 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359340 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359401 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 359462 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 359523 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 359584 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 359645 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359706 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359767 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359828 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359889 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359950 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 360011 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 360072 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 360133 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 360194 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 360255 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 360316 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 360377 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 360438 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360499 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360560 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360621 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360682 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360743 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360804 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360865 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360926 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360988 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 361049 29 96.6 0 ............T................ | A [361076] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //