Array 1 1-354 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_HF926915.1 Clostridioides difficile T11, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
         1	    26	  89.7	    37	---..........................	CTGGAAAATCTATGTTAATGATTTATATAAAAGAAGT	
        64	    29	 100.0	    37	.............................	CAATATTATTATCTCACGTTTTTGCCAATAAAAAGTC	
       130	    29	 100.0	    36	.............................	GGAACATAAACATCTAATCCAGAATTTGGAATAACT 	
       195	    29	 100.0	    37	.............................	CTTATACTTAGTTAGAACTATATATCGACACAAATAT	
       261	    29	  86.2	    36	.C.............CA......A.....	TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 	
       326	    29	  96.6	     0	...............C.............	|                                    	
==========	======	======	======	=============================	=====================================	==================
         6	    29	  95.4	    37	GTTTTATATTAACTATGTGGTATGTAAAT	                                     	       

# Left flank :   |
# Right flank :  TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATA

# Questionable array : NO	 Score: 6.03
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTATATTAACTATGTGGTATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:81.48%AT]
# 	Reference repeat match prediction:         F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
//