Array 1 8286-8912 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQLR01000034.1 Bacillus safensis strain 7783 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 8286 32 100.0 34 ................................ CTTATCTTTTCAATGATTCGCTTATTGCGTTGCC 8352 32 93.8 33 ...A...............T............ TTTGTTCTTCTTCTCAATTTCCTTAAGAGCATT 8417 32 100.0 34 ................................ CTATCGAAAAGGTTGTCCGTATTCTTCCAAATCC 8483 32 93.8 35 ..................CT............ TAATGTAAGTCTCTAATGTAAGTGACACTATTTAT 8550 32 100.0 34 ................................ TTCTGGAGTAACATCTACCCGTTCGTTGTCATAT 8616 32 93.8 34 ...........T.......T............ GTCTCACGCTTTGCCATGACTACATTTCCTTCGA 8682 32 96.9 35 ...........T.................... AACGCCTTAATGCTCCCTACGGTGAGCTTACCGTT 8749 32 93.8 34 ......T........................G GATACCATTGAAGTAATCTCTGGTTTTAATAGCG 8815 32 93.8 34 ...................A...........G CTAAAGTTGATGTTGAAAGAAGCGATCAAGGTTT 8881 32 90.6 0 .......................AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 10 32 95.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTATCATTTCCTAAAAAATGTTACAATTAGGCAGAAATCGCAGTCGCACTCTACATGAGTGCGAGGATTGAAATAATCTTGTTAAGTTGATTAAATTTATTGATTACGTTGCACTTGATATGAGTAGTTGAATTAAGATCATCATCCGTAGGTAGTTTAAAAGGAATATTGACAATTGCACTTGATATAAGTTTGAAAAATATAACTCTGTCCCCTGACTCAGTAGCGATGCTTTGAATCGAATTCAAAATTGTAGCTGAAATAATGAAATAAGTAATTATCAAGATTTAATAGGTTTATTTAAATAGAATTCAGATTAAGAAAAATTCGATGCGAATGTGAGGTGAACTTAAAATCCCCGGGACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTAATGAAGAAGAAAACAAAATTCTATATTGAAATTTGTGAATTTTGCCTATTATTCCCTAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : TGATTGTGTCTTAAACGGGTATGACATTCTCAGAGATCATGATCTTACAACATCCTCTTTCAGATACAAAAGCCATCAAAATAAACTGTTCATATGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTGAATACACCTAAAAAAATCTCAAAACAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGAT # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16576-17065 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQLR01000034.1 Bacillus safensis strain 7783 contig00034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 16576 32 93.8 34 ...........T....T............... AATAGCATCTAATCGTTGTAATAGGTTCATTTTT 16642 32 96.9 36 ...A............................ CGGTAGAACGGTTTATTAGAATAACTCGCCTTCGTT 16710 32 100.0 33 ................................ CGCGCCGTTTATGAATTTCTCTATGTCTTTTTC 16775 32 96.9 25 ...................T............ TTGCAATTTCTTGGAGTCTCTTCGT Deletion [16832] 16832 32 87.5 35 ....................A.AA..G..... ATTTCCAACCGTAATAAATTTACCTTGTCCTTCAA 16899 32 96.9 34 ...........T.................... CCCGCCTTTCTTTTCAGCTTTTTGAGTTTGTCCA 16965 32 93.8 35 .C............A................. GTTTAGTTGTAGCATGAAAATGTATCAATTAGGTA 17032 32 87.5 0 ...................AA.T........A | AA [17056] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 94.2 33 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCGACACCGATTCATTTCTTAACGGTGGTCAACGGCTGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCTGAAGATGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCATAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGAGTGAAAACAAAGTATTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : AACAATAGCAGAATCATACATCGTAATTGATATGAGGATCTAAATAAAGTTCATCGTCAATAGGTACCTTGAAAGGAATATTGACAATTGCACTTGATATAAGTGTGAAAAACATAACTCTCGCACCTGATCCAGTAGTCATGTATTTAGTTGAATACAAAGTTGTTGCTGTAATAAGTATGATTAACAAGTTTCAAAAGATTTAAATAAATAGATTTCATTCTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATAAGGGCGGAAATCGCAGTCGCACTCTACATGAATGCGTGGATTGAAATTTTGCGGCGAAGATAGAAGGTTTCACCGAGAACGGGTCGCACTCTATATGATTGCGTGGATTG # Questionable array : NO Score: 6.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:-1.5, 6:0.25, 7:-0.04, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //