Array 1 497083-496255 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVX01000005.1 Bacteroides ihuae strain Marseille-P2824T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 497082 36 100.0 30 .................................... ATTATACGTTTACCTATCGCTACGCTTCTG 497016 36 100.0 30 .................................... TTATTTTTATTTTTCTTGCGTTTTTTCTTA 496950 36 100.0 30 .................................... AACTCTGTGCTGGAGAAGGTGTAGTAATTG 496884 36 100.0 30 .................................... ATCCGGCGCATACTGGTACAAGGCAAAGGT 496818 36 100.0 30 .................................... TTTAAATTCTACTTTCATTCGTCTACCTTT 496752 36 100.0 30 .................................... CCAATAAATTGGGAGGTAAGAAATACCGGG 496686 36 100.0 30 .................................... TGGAACACTTGAAAGCAGTTGGTAAAATAC 496620 36 100.0 30 .................................... AAGACGCAGAATCATTATTCGCATACGCCC 496554 36 100.0 30 .................................... CGAGGTGGACGAAGCAAACAGCACTTTTAC 496488 36 100.0 30 .................................... CTTAAGCTTCCGAAAGAAATAGTTCCCACA 496422 36 100.0 30 .................................... AATAGGCTAATGTTTAGTACTAATTACGAC 496356 36 100.0 30 .................................... ACTCAACGAAAAAGATTCGTTTAAGAATTA 496290 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTAGTTCCCTTCACTATTGGGATCATTCACAAA # Left flank : CAAAATCTTCGATCCTATTAAAAAAAGTGAGATCAAATAGATAACCAATTCACGAATCTCTGCAAAGATTAGAATCAATTGAATAGGAGGAAAATAAGATGGCTTATTTCCTCCTATTTTTTATTTCTCAACCTTCCACAACACATTTTTTAGAATATACCCATATTGGTTCAGTAGGTTCTTCAGTACAGAACCCAAGAGCAAATTCTAGAAACATTGCTGTTTTATAAATCCATATTTCACCGGATAAGAATAGTTATTCATAGGTTTAGTAGTGTAGAATGTAAAGATTACAGGCATACCGCTACAGGCCTCCTGAGAGGGGTTTGGTGAATTAACTAGTTCAGCGTGGTGAATTAACTACTTCACCACGCTGAACTAGTTAATTCACCACGCTGAAGTTATATGATATACTAAATCAGACCTATTTGTAAAGTTTAAAGACGCAAGCGATTAGGATTATTCACAAAAACAACTTTGATTGGAAAAGAAGCGCTAAA # Right flank : ACGAACTGTATATTCCATTGATTAACAGAGATATACAAAAATAGTCCAAAGCAAAATTACGATTTTATTATTAATAACAAGCAGAATAACTTCATTTTTTCATTTCTAATAATCTTCTGCAAATCTTGTAATACTCTTCGGGCACTTGATCAGTCATGATATTATTATTCTTCAGATGAACAATTCTCTTCGAGATAACTTTATCTACTTTCAACTCATGAGAATCATCTAAACTAAGCTGAAGAACCATACCATTCTGATCAAAAACATTGGCTATTGACTTCACTACAGCGTTACGTAATTTCCTATCGTAGTACATCAATGTCCTTAATTTAATAATCATTTCAAAGAGTGAACACTTTGCTGTTTTAGATATATAGTTATAATGGGCTATAAAATTTCTATCAGCTAAGACCTGAAGATTATTTCTAAAAAAAACTTTTTGATAAAAAGATCTTTTTGCTTCGATACACTCCACCATCAAAGGAACATCTTCGGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTTCACTATTGGGATCATTCACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 594083-591934 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVX01000005.1 Bacteroides ihuae strain Marseille-P2824T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 594082 36 100.0 30 .................................... GCCTCGGTAGATAGGATTGCATTAAGCTTT 594016 36 100.0 30 .................................... GAAAAGAGCGAATTATTATGAGCACGTAAC 593950 36 100.0 30 .................................... TCTTATGCAAAAGGGCAATATCAACCATCT 593884 36 100.0 30 .................................... GCACTGGAAGAAGTAATAGTGAGTTGCATC 593818 36 100.0 31 .................................... TTGGTGCAGCATCATAAGCACCTTGCGCAAC 593751 36 100.0 30 .................................... TGCCAAACTTAGTAGGTTCAATCCCCTTGC 593685 36 100.0 30 .................................... ATAAACGCATCAGTGCAGTGTACGTACTCA 593619 36 100.0 30 .................................... TAAAGTGTACCAGACATTAGCCTTTATAGT 593553 36 100.0 30 .................................... GCATGAAGTCAACTCCATACGCTCAACGCG 593487 36 100.0 30 .................................... CCGACTTCAGGATATCTATTATCAATATCT 593421 36 100.0 30 .................................... CTTTCCGTTGAAGTCTAGTTCAGCAGAAGG 593355 36 100.0 30 .................................... GAGACTTCATAGGGAGTGCATCTTAAATAG 593289 36 100.0 30 .................................... TAGAGCATCGTTGTAAATTGCACCAACGGA 593223 36 100.0 30 .................................... TAATCAATTTCACTTAATCCAATTTGATAA 593157 36 100.0 30 .................................... CTGCTAGAGAAATAAGTACTAACTTTAAAA 593091 36 100.0 30 .................................... CTTTTTCGGTGGAGCTTAAATAAAGAACGG 593025 36 100.0 30 .................................... TAAGATTTTATTTAAGTATTTAATTGGCCA 592959 36 100.0 30 .................................... GAATAACAGTTGAGGCAGTGGTACATTCCT 592893 36 100.0 30 .................................... TACTAGTACCATCAGTAATAGCCATCAATA 592827 36 100.0 30 .................................... GCACGCTTTAATGCTTCTTGTGGAGTTTTA 592761 36 100.0 30 .................................... ACAATTATAACTATCCTTCAAAGAATTTAA 592695 36 100.0 30 .................................... CCGTGTAATCATCTCCCATAGTCCTAGCGT 592629 36 100.0 30 .................................... ACGATTCACAAGATTATACACGCTGTGATT 592563 36 100.0 30 .................................... ATAAAATTCATAGATATCTCTGTACCAACT 592497 36 100.0 30 .................................... ACAATAGATCATGTGATCTTTTTCGTTGCA 592431 36 97.2 30 ......................T............. ACTTGATATAATATGCTAAGTACGTACCAA 592365 36 94.4 30 ....A..........A.................... AGTTAACGTTATATCCCATCCGTCACCTCC 592299 36 100.0 30 .................................... TTGGCTACATCTCTATATAGAAGACAATGA 592233 36 97.2 30 .....A.............................. AATAAATTTACTATCTCCCTTATTGAGCTT 592167 36 97.2 30 .....A.............................. CATTGCAGTTCAGCTCATAGTCGGTATAAA 592101 36 97.2 30 .....A.............................. AAACTGATTCATTATCGTTTCCATCCTAGA 592035 36 97.2 30 .....A.............................. GCCAAATATCGATCTCCAATTTGTACGACA 591969 36 97.2 0 .........A.......................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.3 30 GCTGGGAATGCTCTTGATTTATAGAGTAACTACAGC # Left flank : GTATTCATTCCTGTTAAAGGTGAGAGGAAATACTTCATAACAGAATTATTAAATTCCTATACCATCTGTCGCAAAGTATTTATAAACAGAATATTCCATTTAGAAAACGTTGTGATAAACAAGTATTCTTTGCAAAAGAAAAACGATAAAAATTATCTTTCCTTTAAAGAACTATCCGAGACACTGCGTACCTACAACATCTTGAACGATGACGAAGTAGCTAAATTAGTGCAGCTACGCAATGCTGCATTTCATACTGATGTCCCTTCGGCCGATTTGTTGATTCCAGACAATGAAAAGTTGATAAAACTCACCAAAACTCATCCTACTAAAGAATATATAGACATCTTTGGCACAGGCTTTGATTTGATTAATAAGTGCCTCGATTCATTAGAAAAAGATAAAGTGAAAAAATACAAGCATTAGTATGAAGTTTTATTCTTATTTTAAAGACCAAATTGACACTAAGATGGCTCTAGTAAGCCATTGCAAAGAATTGT # Right flank : TCATCTTTCTCAACAAAGGTTTTGTTCATGGAAAATCTTATTGTAACCCTTAAACAGCATAGAAGATAACTTACCAAAACAACTATACAGATCTTACAGATGGCCAAAGAGTAAAAAAGAGGAAAAATAAAAGTAAAAAGAATGCAGTAAATCAGTTAATTCTTCATTTATAGATAAAGCAAAGTTGTAAAAGAAGTGAGTTTAACATACTATCTCATCAAACGTAACGAGGAGAACATAAAATGAAACTGATTTCTATGACAACTAACAAATTATTGATTTACTTTGTGATCATACAATTCAACAATATATATGTCAAACTATATACACTACATTATGAATTTTATAAATAAGTCACTCCTCGTTTTGTCTCTAGTATTCTTGTGCAGCAGTTGTAGTAATGATGATACTACTTCCGAGTTCTATACTTATTATAATCTTCCTTCCGATTATAATACGAAAATCAAAGAAGACAAGATTATTGTAATCAATGATGAAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGAATGCTCTTGATTTATAGAGTAACTACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 937445-933363 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVX01000005.1 Bacteroides ihuae strain Marseille-P2824T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 937444 29 100.0 35 ............................. TCAGGAACGATATCAGACATGCTAATACCAGCATA 937380 29 100.0 35 ............................. TTTAAAAAACTTTGATATGAATAATAAACAAATAT 937316 29 100.0 34 ............................. TATTCTGCCGATGTGCTTTTAATGCTCGTAACCT 937253 29 100.0 36 ............................. CAATAGCAAAAAGCTCTTCCGCTTTTGTTTTCTTTT 937188 29 100.0 37 ............................. GCGCAATACCTTCTAGCCTCGCCTTTTCGGTCGCAAT 937122 29 100.0 36 ............................. CCATTACGGCCAGTGCCTGAGCGAATAAAAATACAA 937057 29 100.0 36 ............................. CCCGTGGCTGCGCTAGAAGCGTGGGTGAGGAGAAAA 936992 29 100.0 36 ............................. TGAGATACTACACCCTAACCCTCCTTTTACTACTCC 936927 29 100.0 36 ............................. CAACAATGGAATGAAGCTTCATCTCCGACAATCGAA 936862 29 100.0 35 ............................. AGTATCTCTTTCAGCGTAGCCATATCTTTTGTTTT 936798 29 100.0 36 ............................. AACAAAACGACGGTTACAAGCCCGTGTTAATGCAGA 936733 29 100.0 36 ............................. TATACTAATTGAATTAGATAGCTTCCACTAGTGTCG 936668 29 100.0 36 ............................. AAATCTAAAGCCGCTCAATTTGATTTATACTCTACT 936603 29 100.0 37 ............................. CAATATAGAAGAGACACGTATCTAATAACGCTTAAAA 936537 29 100.0 36 ............................. GCTCATGTCATGGTGCCTTCTTAGGTGCCTTGCGCT 936472 29 100.0 35 ............................. TAGAGACAATCAAACATGACAGCGTATATGTCAGT 936408 29 100.0 37 ............................. AAGGAACGGGTGTGCAAGATGCCTTTAAGTCCTTGGT 936342 29 100.0 35 ............................. CCCAAGAAACCAGCGCCGCCCCAAACACCAGAGAG 936278 29 100.0 35 ............................. AATGTGTTTGATAATGTAATGGATGTCGCCCCTTC 936214 29 100.0 37 ............................. TTAAACAGGGGCGGACATATCGAATGTGATCTTATCG 936148 29 100.0 35 ............................. CTCTTTCGCTAACTCCTCGTTAGCGATTCTATTTT 936084 29 100.0 34 ............................. TAGAAACAAGGGTGTTGAGATACAAAGCGTGTCA 936021 29 100.0 36 ............................. GAAACTCACGAATTATATCTACCCCAGCATCCGCAA 935956 29 100.0 36 ............................. TGACAAACTCCCCAGAAACTTTTTTATTCTTCTCCT 935891 29 100.0 36 ............................. TCTATATTTAAATATTTTGCACTATTTATTTGTAGT 935826 29 100.0 37 ............................. ATAAATTTTCATTTCTCAACATAGATGCCGCCGACGT 935760 29 100.0 37 ............................. TGCTGTAGATCTTTGTGCGTTTAGCAAAGAAATTAAG 935694 29 100.0 36 ............................. CTGCTGAACTTCGATAGAGTATTCTGAGATAGTTGT 935629 29 100.0 36 ............................. AATCTTGCACCCCCTCGCTTTATGAATACTTTTTGT 935564 29 100.0 36 ............................. GACGGAAAGGAGTTTTATTTGGCTATGTCGGAGGGT 935499 29 100.0 36 ............................. AAATTTCTACGAGGTCGCTTTGTTGCGCTAAAGAGA 935434 29 100.0 35 ............................. TCCAGCTTCAGTATTAGCAGATCGTCCGCATGGTA 935370 29 100.0 37 ............................. TGAATTTCTTCCCTGTTTTTGAAGCCTCAACGGCGGG 935304 29 100.0 36 ............................. GTTTTTTCTAAGTATAACTTAGCTAACAGCTCTATG 935239 29 100.0 40 ............................. GACAACAAACTGTCCTGACCGTACGCAACTAAGCCTTTTT 935170 29 100.0 37 ............................. TCAACATCTTCCGTGCTCTTCGAATAAGAAGAGTTAG 935104 29 100.0 36 ............................. ATTATCTTACTTTGTATTACGTTGTAACACGATGTA 935039 29 100.0 36 ............................. CGATAATGACGCTCTGGTTATACAACAACGTAGAAA 934974 29 100.0 37 ............................. CTAATTGTAAGTATTGAATACTTAAATTTGAATCTAA 934908 29 100.0 36 ............................. GACCTTGACGAAGCCGGGACACCCGTCGTGGGTGAT 934843 29 100.0 36 ............................. TTGAATCCGTTTAAAAACCAAGCATCAATAATTCGC 934778 29 100.0 35 ............................. AAGAACAACTCCATCTTGAATCTCAGATAGAAGAG 934714 29 100.0 37 ............................. CGGCTGTAATGGATGGTTATGTGACTATCTTGAAAGA 934648 29 100.0 37 ............................. TCTATGTAGAGTAGCAGGTTCTCGGCATCTATATTGA 934582 29 100.0 37 ............................. CGGCTGTATTGGCTATGATCTCAGATGCTTTTACGGC 934516 29 100.0 36 ............................. TCTGGAAGCTGAACGTATTGTTGTCATCTACATAGC 934451 29 100.0 35 ............................. ATGATCCTGGAACATGGATGTGCTACATTGAGCTG 934387 29 100.0 37 ............................. TGCCCCTACATGCATCTTGGATTGGCTGAGACATCAA 934321 29 100.0 36 ............................. AATAAAACGACGGTTCACAGCCCGTGCAAATGCAGA 934256 29 100.0 36 ............................. GAACATAGAGATTAATAGTAATGAACCAATAAATAA 934191 29 100.0 36 ............................. GATATATATAGAGAAGAGGTTCAGAGCTATGCCCGT 934126 29 100.0 36 ............................. ATTTGTATTATTATTTATAAATGGAGTTTTACTCGT 934061 29 100.0 36 ............................. GTGTTCATGAACAAATAGTGCAGGTTGCTAATCCTG 933996 29 100.0 37 ............................. TCTATTCCGATTCTACCTGTAAAATTTGATAATACTT 933930 29 100.0 35 ............................. TGAAAGCTTCAGCGTTTAACAAACCCTTGTATCTC 933866 29 100.0 36 ............................. ATTTGAAGCAATTTTAAAAGGTCGTAAAGAATTTAT 933801 29 100.0 35 ............................. TCATACGGGAGTAAAACGTGCTTATTAATTGCATA 933737 29 100.0 36 ............................. TACTGGCCAGCTTTTCGAGCCATTGCCTTTATTTTT 933672 29 100.0 35 ............................. TTCGGAATGTTAGTAGGAGACGACGCAGCAGGACT 933608 29 100.0 36 ............................. CGCCGAAAATTTTGGGCACATAAAGAGCTAATAGGG 933543 29 100.0 37 ............................. TGCGTCACGGATATACGGTTTTTCTTTCACATCCGAT 933477 29 96.6 57 ...........................C. ATTGGTCGTCAATTGCGCGGTCGCATACATCTTCAATGACTATAGTGATAAATTATT 933391 29 72.4 0 AT.CA........T.G..A........G. | ========== ====== ====== ====== ============================= ========================================================= ================== 63 29 99.5 36 CCTTTAATTGTACCTTATGGAATTGAAAC # Left flank : CCCGCTACATAGCCCTGTCCAGAGACTAACTGGCTGAATTGACTTCATCGACAGATTGCACGAAATATCATTCTGCAAGCAGAGCTATTCTCACGAATTAGAGCATTCGTTCGCCATTGTTAGTCCTTGCTCTGGTTAAATTTAGGCTGAAATATATCGCAATGGTTTGAACTGGAATAGTTAAAATAAGTCTTGATGAAAAAATCATTACTACCAACATTTGTGGATTTAAAGTGTATTTCATAATTTTAGCAAAATTAGAGGAAATAGATCAATATTTTCTTGGTGCAAGTTGTCAATCTCTTTAGAATCTTCTTGCACTACATGCTAAATAGCTCATATTCGCTCTTTGACTTACTGAAAATCAGCTACTTACAATAGATGTCGATCATCAGGCATTTTTATATAATTGATGATCGACATTTTTCAGAAAGAATATCACTATATTTGTTTTCGCTAACCATTTGATATACAGGCATTCTCTGTTTTGAAATTGGAGG # Right flank : CAGCAAAAAAGCGATAAAACTACTGTAAAATAGTTCTATCGCTTTTGACTTTTAAAAAGTATGCCTAAACAGTTAATCCTCTATAGCAGCTTGTGCCGCTGCTAGTCTGGCAATCGGTACTCTGAATGGGGAACAGCTGACGTAATTAAGCCCCACTTTATGGCAGAACTTAACGGAAGAAGGTTCACCACCATGTTCACCACAAATGCCACACTTCAAATCAGGACGAATGGAGCGGCCTTTTTCAGTAGCCATACGTATCAATTGCCCCACTCCTTTTTGATCGAGCACTTGGAAAGGATCTACTTTCAGAATTTTCTTCTCCAGATAAATAGGAAGGAAGGATGCAATATCATCTCGCGAATAACCAAAGGTCATTTGCGTGAGGTCGTTCGTTCCGAACGAGAAGAATTCGGCAGAAGAAGCAATACGATCGGCTGTTAATGCAGCACGAGGAATCTCAATCATTGTACCTACCTTGAAGTCAATAGAATCGTTCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATTGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 1227815-1231356 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNVX01000005.1 Bacteroides ihuae strain Marseille-P2824T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1227815 29 100.0 35 ............................. AACTCCTAATAAGTTTTTTTACAATTTCCGTAACT 1227879 29 100.0 36 ............................. TCGTAATAGATGTAGCGTTCGATGTATTACCGTCAA 1227944 29 100.0 35 ............................. ATACATCAAGAAACTCAGAATAAAATTCAGTAAAT 1228008 29 100.0 37 ............................. CTTAAAAATGCTCTGGGCGAAATAAAGAAGGTGTAAG 1228074 29 100.0 37 ............................. ATAAATAAACATACCCTCTCAATATAGCTTTTCCGGG 1228140 29 100.0 37 ............................. GAGATGGTTGGATTCTTGGTTCTTGGAGGGATAATAA 1228206 29 100.0 36 ............................. AAATCTTCGTTAGCCTTTATTCGTTGCGCCATTGAC 1228271 29 100.0 37 ............................. GAACTCCCAATAAGTTTTTTTACAATTTCCGTTACCG 1228337 29 100.0 36 ............................. TAACATTTTGGGCACTTTTAAATAATAATAGGCCGC 1228402 29 100.0 36 ............................. AACTACAACGGCATTTGAAAAGATTTGCAATCTGAC 1228467 29 100.0 37 ............................. GTTAGTTTTGATTTATATTGATAACTTCGGCTCTATT 1228533 29 100.0 37 ............................. GCCAGTCTTCGTTAGTGAGGCTGTTTGCATCGGCTTT 1228599 29 100.0 36 ............................. GTCCTTCTCTCGTATCGTATTGCGTATAAAGCGGTT 1228664 29 100.0 35 ............................. TAAATATATACGCTTCTTGTGAGTTGCACGCCTTT 1228728 29 100.0 36 ............................. ACAATACGGAGAGCGATCTTAATATTGCATGCCCTT 1228793 29 100.0 36 ............................. TACGAATACTGGGAAGCTGAAAACGTAGAAACTGGG 1228858 29 100.0 36 ............................. CAAAAGACTTATTCGATAAGTTTTGCGAAGACAATC 1228923 29 100.0 36 ............................. AAAAATCGGGGGCTAACATAGATTTGATAAATCAAA 1228988 29 100.0 36 ............................. GATTGCGAACTCGGTATTTGATTCTGTAATGGTGGA 1229053 29 100.0 36 ............................. TACCCACAACGAAAGAGGAGCCACGCCCGGCAAACA 1229118 29 100.0 37 ............................. CAACAATCATAGCGTCAACGAGCGCAATCACATTAGC 1229184 29 100.0 36 ............................. GTCTATTTGTTCAGGATTAGCATTTTTATCACACCA 1229249 29 100.0 36 ............................. CCGAAATGGGGCACTTAAAGACTTTATTTCTATTTT 1229314 29 100.0 35 ............................. ACGGATTAGATATTCCTTTCCGTAGTGCGGCTTCT 1229378 29 100.0 36 ............................. TTAGGAGTTTTTATTCTCTTAAAAGCTCTCACTGAA 1229443 29 100.0 36 ............................. ATATTTTATTTATTCTGTCATATTCGTTATTTGAAT 1229508 29 100.0 37 ............................. AAAGTTATTGAGATATGTCGATTTGAGAATAACCATG 1229574 29 100.0 37 ............................. TGATTTTGTTTCTATTTCTACGATTCGAGAATTGAAT 1229640 29 100.0 35 ............................. TCTGTGGTATTGTCTATGGATCTACTTTGCAAATA 1229704 29 100.0 35 ............................. TCCTTGCGGATGTGAAGCTTTTGCCGGGATGACTT 1229768 29 100.0 36 ............................. CTTAAAAACAGAATTATGAAAGCAATTATCATTATC 1229833 29 100.0 36 ............................. GAGAAGTTAATGCACGTAATAAGAAAGAAGCAATAT 1229898 29 100.0 35 ............................. TCGAATACATTTCATACGAAAGAGGGTTTATCTCT 1229962 29 100.0 36 ............................. AAGCCTTTGTATTCTGGTACGTGCTTATAGGCCGTA 1230027 29 100.0 35 ............................. TAGTTCAATATTTAAAGCAGTAGGATAAACCTCTA 1230091 29 100.0 37 ............................. TCAACTGGCAAAGTTTTAGCAGTGTACACTGAAATAA 1230157 29 100.0 37 ............................. TTGTTAATCAAATACAAAAATTCAGGAGCTCGATCTC 1230223 29 100.0 37 ............................. TGCAACTGGCAAAGTTTTAGCAGTGTACACTGAAATA 1230289 29 100.0 37 ............................. ATCTTTTTGGATTCCCAAACAAGTAGTTCTTTTCAAA 1230355 29 100.0 35 ............................. TCAACATCGATAAGTCTTTGTTTTGGAAATGAAAC 1230419 29 100.0 37 ............................. CATTCTTTTATAACTTCAAAACATCTTCCCTTGCTGT 1230485 29 100.0 36 ............................. ATAAAAGAAGAGGACGTAGACAATATTCGCTTTAAA 1230550 29 100.0 37 ............................. GAACTTCCGGCGTGGGTTATAATCCATTATTGTAAAT 1230616 29 100.0 37 ............................. ATGTACACGCCTTTTGCTATTACAATACCGTCCGATA 1230682 29 100.0 35 ............................. ATTACCCTTGTTAGTTAGCACTAAAGCCGTCTTAA 1230746 29 100.0 36 ............................. AAGAAAGGTGGTATGAACCCGTATGCGGGGCTATAT 1230811 29 100.0 37 ............................. TAATTAGACAATGTTTGTTCTTCATCTTTCAACAAAG 1230877 29 100.0 34 ............................. GTGCTACATTGTCAACCGTCCGGCTCCGCCACTC 1230940 29 100.0 36 ............................. AGAGGTGTACATTTGAATACAAGGACTTGTAAATAT 1231005 29 100.0 35 ............................. CTTCAAGTAAATACCAGAACATTTTTTTACTTTAT 1231069 29 100.0 35 ............................. CTACTATTCCGTGCTCAATTCCTAAATACACAAAT 1231133 29 100.0 36 ............................. CTCGAATCAGGATACACAACAATAACACGGCTAAAC 1231198 29 100.0 37 ............................. ACAAATAACGAGGGCCGCTGTTTTATTCCTTCATCCT 1231264 29 100.0 35 ............................. AGGAACATCAAGATTACTTCTAAAGAAGCTATATT 1231328 29 82.8 0 ............T..C..A.....T...T | ========== ====== ====== ====== ============================= ===================================== ================== 55 29 99.7 36 CCTTTAATTGTACCTTATGGAATTGAAAC # Left flank : CATTTAAAATGTATTGGTAACTCTATGTATGTGATTCTAGTTTACGATTTCGGAGAGAAGCGTGTGGCGAAAATGTTGAAACTTTGCCGCAAGTATTTGAATTGGATTCAAAACTCCGTCTTTGAAGGTGAGATTTCGGAAGTTCGCTTGCATGAGTTACTCATTTCTGCCAAAAAATTTATGAAAGAAGAGAGTGATAGCATTATCATTTTCAAAGGTAGAGACGTCAGGTGGACTGAAAAGCAAATCGTAGGAAAAGAGCGTAGTAGTATAGATATTTTCTTATAGCAAGTTGTCAATGTATCTATAATGCTCTTACATTACGCACAAAATAAGCAATGCTCGCTCTTTGACTTATTGAAAATCAGCTATTTGCAATAGATGTCGATCATCAGGTGTTTTTATATAACTGGTGATCGACATTTTTTAGAAAGAAAATAACTATCTTTGTTTCCGCTAACCAATTGATATACAGGGATTCCCTGTTTTGATTTTGGAGG # Right flank : TGTAAAAATTGTTTTCTAAAATTCACAGAGAAGATTCTGTCCCTGACAACAATAAATAAAACCCGGTCGAATCACTTCGCCCGGGCCTCCATAAATAAACTTGGCAGAGTTTATTTTGAAAATATACTAGTTATAAAGAAATCATTTATTATCAGACCAAAGAGCCTTTGCCGCTATCATAGCCATATCCAAAGTGCTCCACTGTTTCATTAAAGCTGTATCATAGTCTTCATTGGGCAATACTTGCGCATTAGGAACACAAAGACTAAGACGTTCCAACGAAATATAAGGCGTCACCTCATCTATAGCTTCGTATATTTCATCTAGTTCACTTGGCAATGGATAGTGAGACGGAATGAAACCAAACGTAGCTTTCTGTTCGCGAATAAACCACAAAAGAGAGCTTTTGCCACAACTTTCATCATCATAATCAAGTAAAAAGGAATTAACTCCTTCAACAGAGTAAAGCATTTCTGCAGATGCATGAAAAGCGATAAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATTGTACCTTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //