Array 1 2718-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622628.1 Bifidobacterium longum strain 12_1_47BFAA supercont1.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2717 36 100.0 28 .................................... AACCCGATATACTCTAGTTTGCGATTTG 2653 36 100.0 28 .................................... TGTTCTAAGTGAAATAAAGATCCGTTGT 2589 36 100.0 28 .................................... AAGAGCCTCGAAGGGTTCAAAGATGTTG 2525 36 100.0 28 .................................... AGGCTTCCACCACGCCGTCGATCGTGGT 2461 36 100.0 28 .................................... GTTTAGTGCAAGTTTGTCGTACACTTTC 2397 36 100.0 28 .................................... TGTTGGTGCGCCCGGTTCCAGTGCGCAT 2333 36 100.0 28 .................................... CCACTGGCTGTCGCCCGCCGCGCCGATC 2269 36 100.0 28 .................................... TGACGGCTGCGGATATGAGGCTCGCCGT 2205 36 100.0 28 .................................... ACGGTCATGTTGGCGACCTGCTCACCAC 2141 36 100.0 28 .................................... ATGCTCACCGTCAGCCTCGGGTCGAAGG 2077 36 100.0 29 .................................... CGACCACAAGCGCACCGCCAACCTCGAGC 2012 36 100.0 28 .................................... CGCCGAACAATCTTATTCAGCACTGATT 1948 36 100.0 28 .................................... GAAAACGAAGATGAGACCGTGCCTGATG 1884 36 100.0 28 .................................... AAAAATCAGGTGTTAAACATGGCGCTAA 1820 36 100.0 29 .................................... CTTTCTATATTAATAAATGTTAAGGCTTA 1755 36 100.0 29 .................................... AGGATGCGGGCGAGGTCGTCGTGCTGAAG 1690 36 100.0 28 .................................... TGTGTCCGGAGCCGAAGCTGCCCGACCA 1626 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 1561 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 1497 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1433 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 1369 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 1305 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 1241 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1177 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 1113 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1048 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 984 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 920 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 856 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 792 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 727 36 100.0 28 .................................... GTAGGTACGTGGATACGTGGTCATGGGC 663 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 598 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 534 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 35 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAC # Right flank : CCCCTTGCGCGTACTGTGCTTGTATGTTTGTGTTCAATTAGTTGTTGCGGGTTTAGTCACGATGATTTTTCGGGTTTAGGCAGAGCATGCCGACCACGGAATGGTCTTAACTGGATGGTGCTTGTATCTCCGCCAGAAAGGACCGGAAAGGATTATGATCAGCATGCCCCAAGTACAGTCTATCCGTCGTTTGCGGCGGAACGGGGAATCCGTCGCGTCGATCGCGCGGAAAACACATGTCAGCGAGCCGACGGTGCGTAAGTACCTCGCGAAGGAGGATCTGTCGGCCGTGCCGTCGGTGAGAAAGCCGCGCGCGTCGGTGATCGACCCGTATCTGCCCGTGATCGAGCAGTGGCTCGCGGAGGATCGCGCGAACTGGCGCAAGCAGCGGCATACCGCGACCAGGATCTGGGAGCGGTTGAGGGACGAGCATGGCGCGGAGGTCTCCCTGTCCACGGTGACGCGGGCGGTGGCGCGGCTCAGGCGTGAGTTCGCGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 35168-35512 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622638.1 Bifidobacterium longum strain 12_1_47BFAA supercont1.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 35168 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 35234 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [35240] 35318 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 35378 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [35426] 35426 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 35483 27 85.2 0 ..............C....T.....CG | G,CC [35500,35505] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGGATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACGGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCATCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622676.1 Bifidobacterium longum strain 12_1_47BFAA supercont1.52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 43 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 107 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 171 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 236 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 300 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 365 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 429 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 493 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 557 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 621 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 10 36 98.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : AGACACGAAACACCGACTTGACGAAATACACTTGTAGGTGGCC # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //