Array 1 443838-445850 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012588.1 Streptococcus thermophilus strain MN-BM-A01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 443838 36 100.0 30 .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 443904 36 100.0 30 .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 443970 36 100.0 29 .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 444035 36 100.0 30 .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 444101 36 100.0 30 .................................... GTGTATTTAGTAATGGTGATTTTTTAAATT 444167 36 100.0 30 .................................... CATTCATTTTTTATATATCAATAAAACTTT 444233 36 100.0 30 .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 444299 36 100.0 30 .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 444365 36 100.0 30 .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 444431 36 100.0 29 .................................... CTTTTTTTAAATTAATTTATCGTAAGCAA 444496 36 100.0 30 .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 444562 36 100.0 30 .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 444628 36 100.0 30 .................................... TGGAGCAACAAGAATGATTAACTCTAATGC 444694 36 100.0 30 .................................... TTTGATGGATATCATTGATAAACTATACGA 444760 36 100.0 30 .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 444826 36 100.0 30 .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 444892 36 100.0 30 .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 444958 36 100.0 30 .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 445024 36 100.0 30 .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 445090 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 445156 36 100.0 30 .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 445222 36 100.0 29 .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 445287 36 100.0 31 .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 445354 36 100.0 30 .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 445420 36 100.0 30 .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 445486 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 445551 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 445617 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 445683 36 100.0 30 .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 445749 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 445815 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1188100-1186347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012588.1 Streptococcus thermophilus strain MN-BM-A01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1188099 36 100.0 31 .................................... AAACACTTGGTCCATTACTCAGTCCTCAGAG 1188032 36 100.0 30 .................................... AGATACGTCAGTTGTGTTTAGTCTTGCTAC 1187966 36 100.0 30 .................................... ATTCGGTGTACCTGAATATACTAGTCGTGA 1187900 36 100.0 30 .................................... AAACCGTTCGACAATTACAAGAGTGCGGAA 1187834 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 1187768 36 100.0 30 .................................... TATCTCTGAAGGTAAAGCTGAAGGAAATAA 1187702 36 100.0 30 .................................... TCCTAGCGATTACTCATGGACACTTGTAAA 1187636 36 100.0 30 .................................... GGGTGAAAACCCTAATAATACCACATTGAA 1187570 36 100.0 30 .................................... ATTTAAAGCAGGAATGTTCTTCAGTTTCTC 1187504 36 100.0 30 .................................... CGAGTTTATGCTCTTGAATGGTTGTCGTAT 1187438 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1187372 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 1187306 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 1187240 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 1187174 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 1187108 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 1187042 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 1186976 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 1186910 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 1186844 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 1186778 36 100.0 30 .................................... CTGGTAACTTTGAAATCTAACGCAGAATAG 1186712 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 1186646 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 1186580 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1186514 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 1186448 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 1186382 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //