Array 1 219415-216457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVZ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SEH-22 NODE_1_length_722575_cov_22.0454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219414 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 219353 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 219292 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 219231 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 219170 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 219109 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 219048 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 218987 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 218926 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 218865 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 218804 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 218743 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 218682 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 218621 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 218560 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 218499 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 218438 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 218377 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 218316 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 218255 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 218194 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 218133 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 218072 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 218011 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 217950 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 217889 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 217828 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 217767 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 217706 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 217645 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 217584 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 217523 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 217462 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 217401 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 217340 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 217279 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 217218 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 217157 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 217096 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 217035 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 216974 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 216913 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 216852 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 216791 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 216730 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 216669 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 216608 29 96.6 32 ........................G.... CGCTGATATTGTTCGCGCAGATCGTCGTACTG 216547 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216486 29 93.1 0 A...........T................ | A [216459] ========== ====== ====== ====== ============================= ================================ ================== 49 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236688-235684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIVZ010000001.1 Salmonella enterica subsp. enterica serovar Enteritidis strain SEH-22 NODE_1_length_722575_cov_22.0454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236687 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 236626 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 236565 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 236504 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 236443 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 236382 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 236321 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 236260 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 236199 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 236138 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 236077 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 236016 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 235955 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 235894 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 235833 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 235772 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 235711 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //