Array 1 1789246-1786165 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907930.1 Latilactobacillus sakei strain J18 chromosome LSAJ18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1789245 36 100.0 30 .................................... GCATCTGACTTGTCTAGCCCTCGTTCAATT 1789179 36 100.0 30 .................................... GAAGTTTACCGGCTAATGGTGCGCTTAATG 1789113 36 100.0 30 .................................... GTTAAAAGATCGGACGACAGCGACTGTTAA 1789047 36 100.0 30 .................................... CCAAGATAAGATGGGCAAGTGGTTAAATAA 1788981 36 100.0 30 .................................... TTGAGTGAGGAACAAGAGAATTCATATGAA 1788915 36 100.0 30 .................................... TCAACCAATCTGCACCCTCCTCGAAACTCA 1788849 36 100.0 30 .................................... TGTTCAGATACACTTAACATTGTGGTTGTT 1788783 36 100.0 40 .................................... AGCATGTAAGCGGATTATCACGAGATGGCAAGGTGCTTAA 1788707 36 100.0 30 .................................... AGCATGTAAGAAGGGTATTGACAATGTTGT 1788641 36 100.0 30 .................................... TTTATTTATTCAAGACTCGACATTGGATTA 1788575 36 100.0 30 .................................... TGACGCTCCCCGCAGTGTAAGGCATAGTAT 1788509 36 100.0 30 .................................... AGAATCGCCCCAACCAAACCAATTGCCGCC 1788443 36 100.0 30 .................................... AGGTAGGGCGTTGATTAGAGCCGAAAACTT 1788377 36 100.0 30 .................................... AAGAAGTTCGTTTAATTCTGTTAATGCTTT 1788311 36 100.0 30 .................................... GACGAAGTTCATCGCTTACGTAAACTCACT 1788245 36 100.0 30 .................................... CTAGTAGCCCCGCTCCCTCAATACGCCGAA 1788179 36 100.0 30 .................................... GAAACGGCGCTGTTTAAACGCAAAGCCGCA 1788113 36 100.0 30 .................................... TACTGTTCTTGTTTCATCATCACTAGCGGT 1788047 36 100.0 30 .................................... CGTAACACCGGATGACTTGATCGATCATGA 1787981 36 100.0 30 .................................... TGGGATTGTGTATTTCTGATTACCGACCGT 1787915 36 100.0 30 .................................... ATGGTTTAGTTAAGGATGCTGTAACTGATA 1787849 36 100.0 30 .................................... AGTTACCGAGTTGGGCTATTAGTTATACTA 1787783 36 100.0 30 .................................... ACGTGTTGTCTGTCGCAAGGGATACCATAA 1787717 36 100.0 30 .................................... TTCAAGATTGTTAACGTTATTGTTCGTTCT 1787651 36 100.0 29 .................................... GGATTTTCTAATGAATCATAAGCGGTAGA 1787586 36 100.0 30 .................................... CATATGCGCAGAGTGTTTTAAACAAGAATT 1787520 36 100.0 30 .................................... GCGCAAGTCGATTGATAATTCTTCAACAAA 1787454 36 100.0 30 .................................... TCTCGATATGTGTAACTATCAGTATTGTTT 1787388 36 100.0 30 .................................... TCAACTCATAGAGTTGTCGGACACTCTTGG 1787322 36 100.0 30 .................................... ACCAACGTTGGTAAAGCGGTCACGCTCAAT 1787256 36 100.0 30 .................................... GCTAGGGATGAAGCTAAATTTAGATGTGTC 1787190 36 100.0 30 .................................... GTTTGTTGCTGGTGGTGTATAGGGATCGAG 1787124 36 100.0 30 .................................... TGTTCTCTTATGGACAATCTTCATAGGCGA 1787058 36 100.0 30 .................................... TTGTGGCTACCGCCGTGGTTTACTATTAAA 1786992 36 100.0 30 .................................... TCAAGTTTAACAATTGGCGTTTTATTTTCT 1786926 36 100.0 30 .................................... ATTGGATCGCCACAGGCAATCTCGCCAATA 1786860 36 100.0 30 .................................... GAGGTAGAGCGACACTTTGAAATAGGTTCA 1786794 36 100.0 30 .................................... ATCACTAACCATCTTACCTACTAAATTTTC 1786728 36 100.0 30 .................................... TAAAGCCTTGTTGTTTTGTAGCGCCTTTAC 1786662 36 100.0 30 .................................... AGCCTATTAATCTCATTCCAAAAAGCCAAA 1786596 36 100.0 30 .................................... CTTATTGTTATATTGCTTGTCAAAACTAAC 1786530 36 100.0 30 .................................... CATGTTAAACGTGCCCTTGATCACACTTTT 1786464 36 100.0 30 .................................... AGCGTATGTTTCGTTAGCGCCTTGTTTTTG 1786398 36 100.0 30 .................................... TGTCCGCTTATGGACAATCTTCATAGGTGA 1786332 36 97.2 30 A................................... AACAACTGCTACTGGCACATTACCGCTTAA 1786266 36 97.2 30 A................................... TCAATTGCTTGGTAAAGATGGGAAGCTTCA 1786200 36 88.9 0 A..............................C.G.T | ========== ====== ====== ====== ==================================== ======================================== ================== 47 36 99.6 30 GTTTCATCTTAACCGAATGTTGAAGGAAACAATAGC # Left flank : GAAGGAAACAATAGCAACATCTCTTCAATCTTAATTGTAAGCTGGGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCAACAACTGCTTGTTGTGAACTTTGTTTTAGGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCATGAATGGAATGTGTAATTTTGGGAGAATTGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCCTAGTGTCCCTACTGTCCTGTTATTTGCGTGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCGTATATGGGCGATGATAGTACTAAGACAGTGTTTCATCTTAACCGAATGTTGAAGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAACCGAATGTTGAAGGAAACAATAGCGTATATGGGCGATGATAGTACTAAGACAGT # Right flank : CAGAATCTGTCCGGTTTGTGTATTTATAATAAAGTAGAAGAAAGTCTTCCGGGAACATACTAGAAGCTTGTGTCCTTTATAAAAAGTATGATTGGGTGTTTTGTTCTACAATGGTATTATAACCTATAAGATAATGTAGCAAATGACTATATTAAGTGAGGTTTTCATCATGGGTGTTAAAATGATCGTTGTTGATATGGATGGGACTTTTTTGGACCAGAATAATCAATATAATCAGGCGCGGGTTGCGCGAGTTTTTCAGGCGTTACAAGCACGCCAAGTTAAGTTTGTGGTCGCTAGTGGGTCGCAATATCAACGGCTGCAAAATCAATTTGATCCGTATCGTCAGTCGTTAGATTTCATTTCTCAAAAGGGGGCGATTGTGCATCATGGTGATGATTTACTGCGAGTAGACGCATTGGCTGATGATGATTTACAAGCGTTATTAGCGTTAATTGCGAAGGGCTTTCCAGCGGGGATAATTGTGCAAAAAACAATTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTTAACCGAATGTTGAAGGAAACAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1792341-1789467 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907930.1 Latilactobacillus sakei strain J18 chromosome LSAJ18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1792340 36 100.0 30 .................................... GTCCAATTGCCTGAACCAGTATACCATGTG 1792274 36 100.0 30 .................................... ATAATCATTAAGCCGGCTTCTAGCCCGGTT 1792208 36 100.0 30 .................................... TGGTTGTGACCGAAACAGAACGTGGATAAG 1792142 36 100.0 30 .................................... TGTGGCATTGGTGTCAGACTTGATTGAAAG 1792076 36 100.0 30 .................................... TGTAAATACTCTATATCTTTATCAGAAATA 1792010 36 100.0 30 .................................... AATACACCTCTTACCATTGCGTCAACTAAA 1791944 36 100.0 30 .................................... ATCAACATTACTCATACCTAATTTTTTCAT 1791878 36 100.0 30 .................................... TTAACTCGCTGTCTTAATTCAGTAGCACCT 1791812 36 100.0 30 .................................... CCTAAGTTTACAGTTAAGTAGCTCTCTGAG 1791746 36 100.0 30 .................................... TGTAGTCCAATCTGATTTCCATTGAACAGT 1791680 36 100.0 30 .................................... TGAACCTCGCCTAAGTAGTAATAATCGCTC 1791614 36 100.0 30 .................................... TGGCCATTCTTCAACACAGGCACCACGAGG 1791548 36 100.0 30 .................................... AACACTAAACTAGCCGTTGGGCGCGTTAAA 1791482 36 100.0 30 .................................... AACGCGTCTTTATCGAATCGGTCACGTTCA 1791416 36 100.0 30 .................................... TACTCATAGCCACATTCTTGTTGGTTGTCG 1791350 36 100.0 30 .................................... TAACAGACGGCAGCATAAGACTTGCAAGGG 1791284 36 100.0 30 .................................... CTAGGTGAACTAGCACGCCAATCAGGATTT 1791218 36 100.0 30 .................................... ATACCCTAATTTGCATATTGTTAATCTGCA 1791152 36 100.0 30 .................................... CGTTCGCTTATGGACAATCTTCATAGGTGA 1791086 36 100.0 30 .................................... ATGCTGGACAGGTAATCAATGGTGTAGTCG 1791020 36 100.0 30 .................................... GCCCTTCTGCTTATGCTTAATCGACTCCGA 1790954 36 100.0 30 .................................... ATTTAGACCACGTGGAGTAGACATTGTCAA 1790888 36 100.0 30 .................................... CTATACAGATGACCAAGCGGAAGATTTGAT 1790822 36 100.0 30 .................................... TGATGCAGCTGCTAAGTATGGTATCAGTAC 1790756 36 100.0 30 .................................... GTCATATTCGTGCGCCTGCTCCATTCTCGT 1790690 36 100.0 30 .................................... TCCATGAACCCTGACATTTTGTTAATTCGG 1790624 36 100.0 30 .................................... CCCGCCATGTTTGTGGCAAATAAAATAGCC 1790558 36 100.0 30 .................................... GACACTGACGACCAAGGTTAAATAGTCTGG 1790492 36 100.0 30 .................................... GCAGGGGGCGAAGAGTATTACGCCTGCTGA 1790426 36 100.0 30 .................................... TTAGTATGCTCTTCGTTTATCTCAGTACTA 1790360 36 100.0 30 .................................... TAGCAATGGTTCAATAGCTTATTTAGCACC 1790294 36 100.0 30 .................................... CGTGCGTGAAAACACTGTTAATTTGCGCGA 1790228 36 100.0 30 .................................... AGCGTTGGAACCATTGACGACGTTATACAT 1790162 36 100.0 30 .................................... CTCTTCCCACAACCCCGTTTCAAAGTTCCA 1790096 36 100.0 30 .................................... TCTGTTTTAGTCATGCTTATAAATGCTCCC 1790030 36 100.0 30 .................................... AATGAAGGTGCTGTTAATATTAACGTTGAT 1789964 36 100.0 30 .................................... CATTGCAATCCAACATATTAAAAATATTGG 1789898 36 100.0 30 .................................... AGTGACCAACGCGGAGCTGTTTACCGAGGG 1789832 36 100.0 30 .................................... CTTCTTTTTCCATTTGTCTTTAAAGTTCAC 1789766 36 100.0 30 .................................... AACATCTCTTCAATCTTAATTGTAAGCTGG 1789700 36 100.0 30 .................................... AACAACTGCTTGTTGTGAACTTTGTTTTAG 1789634 36 100.0 30 .................................... ATGAATGGAATGTGTAATTTTGGGAGAATT 1789568 36 100.0 30 .................................... CTAGTGTCCCTACTGTCCTGTTATTTGCGT 1789502 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 100.0 30 GTTTCATCTTAACCGAATGTTGAAGGAAACAATAGC # Left flank : GATGGCGAGTATCATACGCTAAATAATGCCATTCATAAAGTAGTTTCCTCGTATACAATGTGTTGTCGAAATGATTCAGCTGCAGGACTAAAATTGCCGGAATTAGTCTTATTGCGAGCCCACGAGTATGAGTAAATATATGCGTTTATTAGTGATGTTTGATTTACCGGTGGTCAAGGCAGAAGATCGACGGGCGGCCAGTAAATTCCGGCAGTATTTACTGGGTGAAGGTTATGTAATGATGCAATATTCCGTCTACTATCGAATTGTGAATGGCTATGATATGTCAAAAAAATATGAGTATCGATTAAATGATAATTTGCCCGAAAAGGGGTCCGTACGATTATTGATTGTGACAGAGAAACAGTTTGATGAAATGCGGTTACTTGTAGGGGATCGGTTACCTAATGAGGAAAAAGTTGATGGGAACCAGTTGACTACATTTTGACCATCAAAAAAGGCTCGATATCGTTATGATATCGGGCTTTTTTAGTGAAGGT # Right flank : GTATATGGGCGATGATAGTACTAAGACAGTGTTTCATCTTAACCGAATGTTGAAGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTAACCGAATGTTGAAGGAAACAATAGCGTATATGGGCGATGATAGTACTAAGACAGTGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCGCATCTGACTTGTCTAGCCCTCGTTCAATTGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCGAAGTTTACCGGCTAATGGTGCGCTTAATGGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCGTTAAAAGATCGGACGACAGCGACTGTTAAGTTTCATCTTAACCGAATGTTGAAGGAAACAATAGCCCAAGATAAGATGGGCAAGTGGTTAAATAAGTTTCATCTTAACCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTTAACCGAATGTTGAAGGAAACAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //