Array 1 20765-22413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZE01000207.1 Pseudomonas aeruginosa strain ATCC 33358 scaffold_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20765 28 100.0 32 ............................ AGCATGGAGACGCAACCATGATCGACCCAGCA 20825 28 100.0 32 ............................ TTCAGAGGCTGATACGCCTCGGCCGCCTTGGC 20885 28 100.0 32 ............................ GATCCCGCTGAGCCGCCATCAGACCCCAAGGA 20945 28 100.0 32 ............................ TTGGCGATCAACTGATCAGCGATAGTGTTGTA 21005 28 100.0 32 ............................ TGAATATCGCTCAACCCTATGACGTCACTCGC 21065 28 100.0 32 ............................ GATGACGGCACGAAGTCCAGCATGGTCGGCAA 21125 28 100.0 32 ............................ GGCATCGACTCGCCGGACCTGCTGAGCCGGCT 21185 28 100.0 32 ............................ TTATGGAGCAAGCCATTTCATCAACCATGAAG 21245 28 100.0 32 ............................ TATATCCGGGCGCTCAGCACCCAGCGATATGG 21305 28 100.0 33 ............................ AGCGATCTCAAGGCCGGAGCCGAGCGCCAGCGT 21366 28 100.0 32 ............................ AGTTCCAAGTCGCCTCGGCGCACTGCAAGCAG 21426 28 100.0 32 ............................ ACCTTTCCTTTTGCCGGCAGCAGTCCAATCGA 21486 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 21546 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 21606 28 100.0 32 ............................ ATGCAGAGGGTAGCTACTGCACGAAATTTCGA 21666 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 21726 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 21786 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 21846 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 21906 28 100.0 32 ............................ ATGAGCTGCCCCCTTATGCGCCAGTGCCGGTG 21966 28 100.0 32 ............................ TGTGATCGCCGCTACCTCCATCATAGAGAAGC 22026 28 100.0 32 ............................ AAGTTCCGGGAAGCGGTCGAGCCGAAAGCTAT 22086 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 22146 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 22206 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 22266 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 22326 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 22386 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31809-30941 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZE01000207.1 Pseudomonas aeruginosa strain ATCC 33358 scaffold_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31808 28 100.0 32 ............................ AATGCGACGGCGAATATCGCCCTGCAATGGAT 31748 28 100.0 32 ............................ TGATCAAGATTCGCGTCGATGGCTGCAAGCTC 31688 28 100.0 32 ............................ CTTGACCTGCCGGGACTCCCAAGGGGCTGGGG 31628 28 100.0 32 ............................ TGCGCGAGTCCAAAGGCGATCCTGTTGGTAGC 31568 28 100.0 32 ............................ TCGCGGACTGGGATGAAATGCGTAAAGAGCGC 31508 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 31448 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 31388 28 100.0 32 ............................ AGGTCTCAGCAGAGGCTAAAACGGCCGGCATC 31328 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 31268 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 31208 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 31148 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 31088 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 31028 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTAGGGCGA 30968 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //