Array 1 194541-195117 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJK01000038.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039516 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194541 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 194602 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 194663 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 194724 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 194785 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 194846 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 194907 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 194968 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 195029 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 195090 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211254-213054 **** Predicted by CRISPRDetect 2.4 *** >NZ_MEJK01000038.1 Salmonella enterica subsp. enterica serovar Oranienburg strain CFSAN039516 scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 211254 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 211315 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 211376 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 211437 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 211498 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 211559 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 211620 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 211682 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 211743 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 211804 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 211865 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 211926 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 211987 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 212048 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 212109 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 212170 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 212231 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 212292 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 212353 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 212414 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 212475 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 212536 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 212597 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 212658 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 212719 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 212780 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 212841 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 212902 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 212963 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 213025 29 86.2 0 TAA.........T................ | A [213049] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //