Array 1 365359-366485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046278.1 Salmonella enterica strain FDAARGOS_708 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 365359 29 100.0 32 ............................. CATATTCAGGCTTCAAACCACAGGTCGGACAT 365420 29 100.0 32 ............................. CCGGCGTATCCCCGATGGATTACCGGGGCCTG 365481 29 100.0 32 ............................. ACGCCGAGGAAACGCAAAATAACGTTATAAAC 365542 29 100.0 32 ............................. GGCTAAAAATCCAGACGTGACGGGGATGTTTA 365603 29 100.0 32 ............................. ACTTTCAATCTGATAGCTCCATTCCCAATCAC 365664 29 100.0 32 ............................. AAAATGCTTCGCCTTCAGGAGGAAACCTACAT 365725 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 365786 29 100.0 32 ............................. GCTACTGCCTGAACGGTGCTTTTGTAGGATTG 365847 29 100.0 32 ............................. CCCTTGAGAACGGCGTTGAGTGCCAGATGGTC 365908 29 100.0 32 ............................. CGCAATCTAAACACATAGCCGAACGTATTACC 365969 29 100.0 32 ............................. TAACAATGGGATCAGAAGCAGTGATGAATGCA 366030 29 100.0 33 ............................. GCTCCAACCGTGGACCCGAGGTTGATCAGTACC 366092 29 96.6 32 .............T............... TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 366153 29 96.6 32 .............T............... AGAACCATCTTTCTGCGATTTATACTCAACGA 366214 29 96.6 32 .............T............... CGTGTCAATCCAACCTGCGATCCCGTTCTCAC 366275 29 100.0 32 ............................. TGGTGTGCGTGTGGCTGGAATTTTTTAATCAG 366336 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 366397 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 366458 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCTTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTAGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGCATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 383048-386861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046278.1 Salmonella enterica strain FDAARGOS_708 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 383048 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 383109 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 383170 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 383231 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 383292 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 383353 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 383414 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 383475 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 383536 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 383598 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 383659 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 383720 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 383781 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 383842 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 383903 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 383964 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 384025 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 384086 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 384147 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 384208 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 384270 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 384331 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 384392 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 384453 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 384514 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 384575 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 384636 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 384697 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 384758 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 384819 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 384881 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 384942 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 385003 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 385064 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 385125 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 385186 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 385247 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 385308 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 385369 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 385430 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 385491 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 385552 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 385613 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 385674 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 385735 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 385796 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 385857 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 385918 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 385979 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 386041 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 386102 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 386163 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 386224 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 386285 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 386346 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 386407 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 386468 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 386529 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 386590 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 386651 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 386712 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 386773 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 386834 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //