Array 1 161094-160515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 161093 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161032 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 160971 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160910 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160849 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160788 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160727 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160666 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160605 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160544 29 93.1 0 A...........T................ | A [160517] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCCATGTTTGATTGTGCGGATTGACCAAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163253-161394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163252 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163191 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163130 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163069 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163008 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162947 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162886 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162825 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162764 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162703 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162642 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162581 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162520 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162459 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162398 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162337 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162276 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162215 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162154 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162093 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162032 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161971 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161910 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161849 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161788 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161727 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161666 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161605 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161544 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161483 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161422 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGTGTCCAGCGGACATCCTCAGCCGGCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATAGCGTGAGGCAATTCTTAGCGTTGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGTTGCACCTGAGCGCCCCTTCACTGGACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 181864-179760 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZNZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712406, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181863 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181802 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181741 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181680 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181619 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181558 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181497 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181436 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181375 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181314 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181253 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181192 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181131 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181070 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181009 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180948 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180887 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180826 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180765 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180704 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180643 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180582 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180520 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180459 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180398 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180337 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180276 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180214 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180153 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180092 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180031 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179970 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179909 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179848 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179787 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //