Array 1 1170865-1168953 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQA01000003.1 Bifidobacterium catenulatum strain 1899B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1170864 30 90.9 32 ---.............................. AGCTGGACGTGTGGCAGAGTTTCCAGCACGAC 1170802 33 100.0 35 ................................. ATCACCTCCGACATCCGGCAGGAGATGGACTCGAC 1170734 33 100.0 34 ................................. GCATTGAAGTCGTTGATACCGGCTGAAATGATAA 1170667 33 100.0 35 ................................. GAGCCTGAGACGCACATTACCGCGACGGCTTGGTA 1170599 33 100.0 35 ................................. CGTAGATCGTGATGGCGCTGATCACGTCACGGCCG 1170531 33 100.0 35 ................................. TCCTGGATCTGCTGGATCGCCTGGATCACATCGGC 1170463 33 100.0 36 ................................. GACGCAGTATGACGTGCCTTATTGCAAGACGGTGCA 1170394 33 100.0 34 ................................. ACGGATGAAGAACTTGAAGAAATTCAATTATTTG 1170327 33 100.0 35 ................................. ACATATGGATGGGTTAACCGTCAGAAGACTAACCC 1170259 33 100.0 34 ................................. ACGCCGGCGACCTCGAGGTGCACGTCGGGCTTGA 1170192 33 100.0 33 ................................. CGGGAACGCCTTCTGCACGTCACCGCCGGTCAA 1170126 33 100.0 33 ................................. ATGATCGGCGAGTTGGCGAGTTCGGGGCTGAGC 1170060 33 97.0 35 ...A............................. GCAAACGCGCTGGCGGAACAGGAAGAAAAAAGAAC 1169992 33 100.0 33 ................................. GTAGCACCAAGGACACGGCCGGGAACGGCGCGA 1169926 33 100.0 33 ................................. TGCGGGCGATACTGAGGCTCGCCTACCGGCGTG 1169860 33 100.0 35 ................................. ATCCGAATCCTGCGCCCCGGAATCAATCTGGATGA 1169792 33 100.0 32 ................................. TTTTACAAAATACATGGATTCATCCGCCTGCG 1169727 33 100.0 35 ................................. AACGTAGGCGTTGCCGTTGCCGACTTGCCAGCACA 1169659 33 100.0 35 ................................. GGCAACTACAATTATCGCAGTCTCGAAAATATCCT 1169591 33 100.0 34 ................................. TGGATCGAGTCGGATTGTGACAGGATTTCCCCGC 1169524 33 100.0 35 ................................. TGCTTGTGCGCCGTTGGTGCGTTGCCATGGTCTTG 1169456 33 100.0 34 ................................. CATGCTCATACCGGTGGCCGGCAGCGTGTCGCGG 1169389 33 100.0 35 ................................. GTTATCGCATAAGCTCCTCACGTTGCCCTCAATCA 1169321 33 97.0 33 .............T................... CACGGTCGAGTCGCCAACGTCCATCACGCCGAG 1169255 33 100.0 35 ................................. TTGACCGGTCCGAAGAGAGGATGCGCAGGGTTCGT 1169187 33 100.0 34 ................................. GGGGACAACAAGGCCGGTTGGGCGCGAGCCTTCG 1169120 33 100.0 34 ................................. ATCGTCTGAAGGTCGCCCATGTCCAAGCCATCGA 1169053 33 97.0 35 ..........A...................... GGCCACTGATCTTTTTGCGTCCGGGGTTCTCGTAA 1168985 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 29 33 99.4 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : | # Right flank : CGGTGTCTGCAGCGTTCCAGCCACCGCGTGGATGTCGCTCTCCCTGTTTATGTCCAGTGTTTTCCGCACATGCGGGGATGATTCCGCATGTGCGGGACTGTTAGTAACGGAAAACCTGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCTCATGGGCCCGCTTCTGAAAGCTATGTAAAAGAAATTGTGTATGTGAAAACGGGCGGGTGGGTGCGGATGCATGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGCTTATCTCGTGGGGGTCATCAAGCTGGACATATTGTGTCCCATGGGATGCAATATATCGTATGGAAATGCATATGACTGGTGAGTACCGCCAATGGTTCGGCCGGATAAAGGACCGGAACACGAAAGCCCGAATCAACGCGAGGCTCCGATTGTGCGTCTAGGCGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGCGGTAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14-3335 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQA01000014.1 Bifidobacterium catenulatum strain 1899B Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 14 33 100.0 36 ................................. CGTGAAGTTGCAATCGTTGGATGCGCATGTCCCCCA 83 33 100.0 34 ................................. TCCGTGATTGCCAGACCGCCGCTGAACGTGACAG 150 33 100.0 34 ................................. AGTTGGTCGACCGCCTGGTCTGCAGTCAGATTGC 217 33 100.0 34 ................................. TCCGTTGGCGTCGGCGTGGTCTGCTTGTAGACCT 284 33 100.0 37 ................................. TGACCATGTACGGCTGTGGCGGACTGTGGCAGGCAAT 354 33 100.0 34 ................................. TGGATGTTCTGCAACGAGTCAACGGCCATCTGCG 421 33 100.0 34 ................................. CTATTGTCGCGTGCTGTGGTATGGCGTGGTTTAT 488 33 100.0 34 ................................. AACCAGGCGCTGCTGGACCTCGGCATGACCGACG 555 33 97.0 34 ....................A............ TGGATGTTCTGCAACGAGTCAACGGCCATCTGCG 622 33 100.0 34 ................................. CTATTGTCGCGTGCTGTGGTATGGCGTGGTTTAT 689 33 100.0 34 ................................. AACCAGGCGCTGCTGGACCTCGGCATGACCGACG 756 33 97.0 35 ....................A............ CGCTCAAATGGCGTCCGATCTGACACTCAAAAATC 824 33 100.0 32 ................................. GTTGTTGTTTGCTTGTTGGCTCCCATCTTATA 889 33 100.0 34 ................................. CGCGACCACGAACAGGTCGTGTGTGGCGGCGTAT 956 33 100.0 34 ................................. ATGGCGGTCAACAACGGTAGCGCCTTGGCGCTTG 1023 33 100.0 32 ................................. AGCTGGACGTGTGGCAGAGTTTCCAGCACGAC 1088 33 100.0 35 ................................. ATCACCTCCGACATCCGGCAGGAGATGGACTCGAC 1156 33 100.0 34 ................................. GCATTGAAGTCGTTGATACCGGCTGAAATGATAA 1223 33 100.0 35 ................................. GAGCCTGAGACGCACATTACCGCGACGGCTTGGTA 1291 33 100.0 35 ................................. CGTAGATCGTGATGGCGCTGATCACGTCACGGCCG 1359 33 100.0 35 ................................. TCCTGGATCTGCTGGATCGCCTGGATCACATCGGC 1427 33 100.0 34 ................................. GACTACATCCTCCGCCGCATCGAACGCGACGACC 1494 33 100.0 34 ................................. CTATTGTCGCGTGCTGTGGTATGGCGTGGTTTAT 1561 33 100.0 34 ................................. AACCAGGCGCTGCTGGACCTCGGCATGACCGACG 1628 33 97.0 35 ....................A............ CGCTCAAATGGCGTCCGATCTGACACTCAAAAATC 1696 33 100.0 32 ................................. GTTGTTGTTTGCTTGTTGGCTCCCATCTTATA 1761 33 100.0 34 ................................. CGCGACCACGAACAGGTCGTGTGTGGCGGCGTAT 1828 33 100.0 34 ................................. ATGGCGGTCAACAACGGNAGCGCCTTGGCGCTTG 1895 33 100.0 32 ................................. AGCTGGACGTGTGGCAGAGTTTCCAGCACGAC 1960 33 100.0 35 ................................. ATCACCTCCGACATCCGGCAGGAGATGGACTCGAC 2028 33 100.0 34 ................................. GCATTGAAGTCGTTGATACCGGCTGAAATGATAA 2095 33 100.0 34 ................................. CTATTGTCGCGTGCTGTGGTATGGCGTGGTTTAT 2162 33 100.0 34 ................................. AACCAGGCGCTGCTGGACCTCGGCATGACCGACG 2229 33 97.0 35 ....................A............ CGCTCAAATGGCGTCCGATCTGACACTCAAAAATC 2297 33 100.0 32 ................................. GTTGTTGTTTGCTTGTTGGCTCCCATCTTATA 2362 33 100.0 34 ................................. CGCGACCACGAACAGGTCGTGTGTGGCGGCGTAT 2429 33 100.0 34 ................................. ATGGCGGTCAACAACGGTAGCGCCTTGGCGCTTG 2496 33 100.0 32 ................................. AGCTGGACGTGTGGCAGAGTTTNCAGCACGAC 2561 33 100.0 35 ................................. ATCACCTCCGACATCCGGCAGGAGATGGACTCGAC 2629 33 100.0 34 ................................. GCATTGAAGTCGTTGATACCGGCTGAAATGATAA 2696 33 100.0 35 ................................. GAGCCTGAGACGCACATTACCGCGACGGCTTGGTA 2764 33 100.0 35 ................................. CGTAGATCGTGATGGCGCTGATCACGTCACGGCCG 2832 33 100.0 35 ................................. TCCTGGATCTGCTGGATCGCCTGGATCACATCGGC 2900 33 100.0 36 ................................. GACGCAGTATGACGTGCCTTATTGCAAGACGGTGCA 2969 33 97.0 34 ....................A............ ACGGATGAAGAACTTGAAGAAATTCAATTATTTG 3036 33 100.0 35 ................................. ACATATGGAGGGGTTAACCGTAAGAAGACTAACCC 3104 33 90.9 34 .C........G.........T............ AGGCCGGCGACCTGGAGGTGCCTGTCGGGCTTGA 3171 33 93.9 33 .C.........................A..... CGGGAATGCTTCCTGCACGTCACCGCCGGTCAA 3237 33 100.0 33 ................................. ATGATCGGCGAGTTGGCGAGTTCGGGGCTGAGC 3303 33 97.0 0 ...A............................. | ========== ====== ====== ====== ================================= ===================================== ================== 50 33 99.3 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CCATGCAGAACGTG # Right flank : GCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [10.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 759-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQA01000005.1 Bifidobacterium catenulatum strain 1899B Contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 758 33 100.0 35 ................................. GCCAATCGACACGTGGCAGGCGTTGAAAGCATCCT 690 33 100.0 36 ................................. GAGAACATCGACGATGCTGGCGACTACGCGCAGGCC 621 33 100.0 35 ................................. CAGAACCTGCTCGACGACGTGTACGACGAAGGCTA 553 33 100.0 35 ................................. GGGACGGCAGGCCATGACCGATCTGCTCACGCCAA 485 33 100.0 33 ................................. ATGCAGAAGGACGATGAAGCGTTTGAAGCATGG 419 33 100.0 34 ................................. TGTGTTCCACTGCCGGTGAACTTGACGTTGCCGT 352 33 100.0 35 ................................. AACGACAGCGAGCAGGAGCTGGACGAACGCGCCAT 284 33 100.0 32 ................................. CTTATGGAAAAGGAGAGCACCATGCAGAACGT 219 33 100.0 36 ................................. CGTGAAGTTGCAATCGTTGGATGCGCATGTCCCCCA 150 33 100.0 34 ................................. TCCGTGATTGCCAGACCGCCGCTGAACGTGACAG 83 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 100.0 35 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : AATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAAGATTGAGCATTACGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGAAGAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGGGTGTGACGTCCGGCATTCAGAGCGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCAGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCACTCATGATGAGGGCTGTTTTTCGCACCTGAAAAACTATCGAAATTCGAATTGTGATTTTCGTGGGGCGTTTGAAAACTAAATAGTGGATATTAAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGGTATGTTGTTCGTCGTACCGGCGGTGTTGTTTGATATTCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACA # Right flank : TAGTTGGTCGACCGCCTGGTCTGCAGTCAGATTGCGTCGCTCTCCTCACGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //