Array 1 1403273-1402081 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMXY01000001.1 Klebsiella quasipneumoniae strain NFIX20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1403272 28 100.0 33 ............................ GAAGACGGGGTGGTAGTACCAGGCGTCCGGGTC 1403211 28 100.0 33 ............................ CAGAATCACCGCGCCGCCGCTGAAAAACTGATC 1403150 28 100.0 33 ............................ TACTGGCTGGCGTACGTATTGCGATAGCACGGC 1403089 28 100.0 33 ............................ CTGGATGCTTCGCTCACGGTAGTAGCGAACGAG 1403028 28 100.0 34 ............................ TGGCTCACAGGACGGCGTAAAGGGGGATTTTGTG 1402966 28 100.0 33 ............................ TCCCGTCCGGTAGCAGACCTAAATCCTGGCGAT 1402905 28 100.0 34 ............................ TGGCTCACAGGACGGCGTAAAGGGGGATTTTGTG 1402843 28 100.0 33 ............................ TCCCGTCCGGTAGCAGACCTAAATCCTGGCGAT 1402782 28 100.0 34 ............................ TGGCTCACAGGACGGCGTAAAGGGGGATTTTGTG 1402720 28 100.0 33 ............................ TCCCGTCCGGTAGCAGACCTAAATCCTGGCGAT 1402659 28 100.0 33 ............................ TAAGCCAGAACCTTTCCGCATCCTCGATCGCCG 1402598 28 100.0 33 ............................ TGCTCCCCACATCGCACAGAGGTAAGACATGTC 1402537 28 100.0 33 ............................ TATCCCCTAGAATATAGCGGCGATAATTTGTAT 1402476 28 96.4 33 ..........T................. TGTCTGCATGAGCGGTTAATTGAGGCCGGAGTG 1402415 28 100.0 33 ............................ CAGTGGCGGGATAAGCAGACTGGAGAGCAAAAA 1402354 28 96.4 33 T........................... CATGGCACATTACTGGAGAGACTGACTCATGGC 1402293 28 100.0 34 ............................ CGAGCAGGGGAGCAACAACGCGAGAGACAGCATG 1402231 28 100.0 33 ............................ TGAACAGGAGAGAGACGATGCGCCTGAGCATGA 1402170 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 1402109 28 82.1 0 T......A....TC..........C... | C [1402087] ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGTGGACGAATGAAGCTATGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAATATTCCTCAGCCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCTGCCTGCCAGAAGGCGTCTACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCGCCGCTGCCCGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCCTGTGGACGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCTAATACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1412494-1411978 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMXY01000001.1 Klebsiella quasipneumoniae strain NFIX20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1412493 28 100.0 33 ............................ TAAAAATGCGTACATTAAACGTTTTCACATTTA 1412432 28 100.0 33 ............................ CAAACGAGGTACACAAAATGACATACGACGATA 1412371 28 100.0 33 ............................ CAGACGGATCGCTGTCGGTTACGGCTGTTGTGT 1412310 28 100.0 33 ............................ TGCCGTCAGTCATGCGCAGCGGTCCCCAGCGGT 1412249 28 100.0 33 ............................ CAAAGTCTATCTCGGTTTCAAGCAGGCCCTTAG 1412188 28 100.0 33 ............................ CAGCCCGGCCCGTCAGAGGCTGATTGCTGTGTA 1412127 28 100.0 33 ............................ TATCATGATGCGTACCGAGTGGGGGGCTTCGGT 1412066 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 1412005 28 82.1 0 ...........A..........G.C.CG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GGTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCGGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGCGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACCACGAGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATAAGGGGAGATACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TGACCGTTTATCTGATGCAGACGCATCAATGCGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTGTGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGACTTTATGACTCATCTGGAGATATCGCTCTCCCTATTAATTATTTTTAATTTTTATATTATTATTTTAGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGGTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCATTGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //