Array 1 25864-24397 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMFP01000102.1 Acinetobacter baumannii Naval-57 ctg7180000008080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25863 28 100.0 32 ............................ AGATGCAAACCAAGACACTTCAACTAAAGATC 25803 28 100.0 32 ............................ TTCATCACCACAGCCATTTGTTCATTGGTTAC 25743 28 100.0 32 ............................ AACGTCCCCCAAACATTCACGGGAGGATTCAG 25683 28 100.0 32 ............................ TGCTGTCGTGAAATAAGTGAAATCGGCAAAAT 25623 28 100.0 32 ............................ CCTCGCTCTCGATCCTGATCAGATTGAGGAAA 25563 28 100.0 32 ............................ AATCAAACGAAACGCCGATTTATATCGAAGTA 25503 28 100.0 32 ............................ TTATACAAATCCTGATTTTGACCCTAATGCAC 25443 28 100.0 32 ............................ TAACAACGTTGGTTATTGGGAGCGTTGTCTCG 25383 28 100.0 32 ............................ TTCAGCACGACCTTTCTCGTACAAACGAAGCA 25323 28 100.0 32 ............................ GACAATATTAGTTGTACGCACATTTAAATTAG 25263 28 100.0 32 ............................ GCGTATTAAATGGCGGGAAAAACTTTGTTGCT 25203 28 100.0 32 ............................ AGTGCAGTCAAAACTACTCCACATTTTTTAAA 25143 28 100.0 32 ............................ ATTGTCTTGTTATTAACTTTTGCATTCATGTT 25083 28 100.0 32 ............................ TTTAACAACCACTTCGACGGCATCATATTCGC 25023 28 100.0 32 ............................ TTGATAAATCCCGTTTAAAGCTTGGAAATTTA 24963 28 100.0 32 ............................ TTGACGGATAGAGAGAAATGGCGACATTAAAC 24903 28 100.0 32 ............................ AACTTACTTTGGGTGTTGGCCCGATCTTTGTT 24843 28 100.0 32 ............................ CCGCAGATTTACGGATGCCTGTAACTGTCATG 24783 28 96.4 32 ...A........................ TATCATGAACATTGTTCCTTGACCCACGGACA 24723 28 92.9 32 ...A.....T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 24663 28 100.0 32 ............................ CAAATCAAAAGTGCAGTTGCTGCCTCAATAAC 24603 28 96.4 32 ...A........................ TCTTCATCTGTTACATATGAAGCAAGGATCTT 24543 28 92.9 32 ...A.......T................ GTCAAACGACAGGGCTACAAAAACTTAATCTT 24483 28 96.4 31 ...A........................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 24424 27 78.6 0 A..T........TC........C.-... | A [24420] ========== ====== ====== ====== ============================ ================================ ================== 25 28 98.1 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCCTCATTTAATAAAGTTCGAGCACTGAGATAAGGTAAATCAAGTGCTTGCTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAGTTAATCGTCTTTAAACTAAAGTGTACTGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : TTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30954-34162 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMFP01000102.1 Acinetobacter baumannii Naval-57 ctg7180000008080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30954 28 100.0 32 ............................ ATGCCGCGTGGGTAATGAACTGCTTTTTGTAC 31014 28 100.0 32 ............................ AAGCAACTCTCCACAGTAGGCGCAGTGACCGC 31074 28 100.0 32 ............................ TATAAACGATTGCTGACGCTCAGGGGCCGCAT 31134 28 100.0 32 ............................ CAACCACGTCTAAGCATTCTTTGATAAATTGC 31194 28 100.0 32 ............................ ACACCAATCGGCGTGCATGAACGAGGCAGAAT 31254 28 100.0 32 ............................ GAATGTTGGGGAGTCTACGTCTGCAACTTGTA 31314 28 100.0 32 ............................ TGTACTGTAACCTTGTGCGACTGTGAAACAGT 31374 28 100.0 32 ............................ AGGCATCGTCGGAAGTCACAAATCCGTTTCCT 31434 28 100.0 32 ............................ GACAAGCTACAGGTGGCGGTACATCAAAAGTA 31494 28 100.0 32 ............................ ATCTCAGGCCGAGCACATATCTTCAAGTCGTT 31554 28 100.0 32 ............................ GCGCATGGTGATATGTCTGGCATTCAGTCAAT 31614 28 100.0 32 ............................ TGAAAAGCCGCACTATTATCTTGACCTTCCAA 31674 28 100.0 32 ............................ TTGGCCAACCATTTAAAACTGAAATCGACCTA 31734 28 100.0 32 ............................ ATTAAATCTGTCATGCCTGACAAAGTATCAGC 31794 28 100.0 32 ............................ TGAATAGGTGTATCACCTTCCTTGAAATCAGA 31854 28 100.0 33 ............................ CAATAAAGGAATTATACAGTAGTATTAACTACC 31915 28 100.0 32 ............................ ATTATGAAGATGAGTTGAATCTGGAAAATACT 31975 28 100.0 32 ............................ GACAACATGGAAAGCTTCATTCTTAATTTGTT 32035 28 100.0 32 ............................ TAATTGTTTTTGGTCTAAAGTCATTTCTATCA 32095 28 100.0 32 ............................ TCAAAAAAGCAAATAGTTGCAAGCCGGTCTTT 32155 28 100.0 32 ............................ ATGTTTATTACACAAGGCAATCAGCAAGAAGT 32215 28 100.0 32 ............................ TCATATACAACTCGGTTTGCTTTACCGTTTTT 32275 28 100.0 32 ............................ AATACTTCTTGCTTAGATATCTGGAAAAGCTT 32335 28 100.0 32 ............................ GCAATGATCACAGTGATCAAATTGATATGGGT 32395 28 100.0 32 ............................ ATTCGTTAAAAGTCATCAGCTTTGCTCCATAC 32455 28 100.0 32 ............................ GTTAATTGCATTGGATCTTTATCGCATGTTCA 32515 28 100.0 32 ............................ GACCCAAAAACATTATGACCTTGAAGCAACTT 32575 28 100.0 32 ............................ AATGTGAGCTGCTTATTAACGGTATCAACCCC 32635 28 100.0 32 ............................ AAACTTAGAAACCTTATCAAATCAGTTAAATA 32695 28 100.0 32 ............................ ATCACGCAATATGGCTGATCTCATCATTGACC 32755 28 100.0 32 ............................ AATATCGGGAAAAAGACCTGTACTAGATTGAG 32815 28 100.0 32 ............................ ATCAATTTGAAGCCCCTCGATGTCAGCAAAGA 32875 28 100.0 32 ............................ TACTACTTTGGCAACCGTACCAACCGCACTTA 32935 28 100.0 32 ............................ TGAAGTAACCATTTCAAATGTGATATCAGCTT 32995 28 100.0 32 ............................ ATTTATGAAGCTCGTAGAAATCGACTTTTCCC 33055 28 100.0 32 ............................ AAGTAACTCAGGCTTTAAGTCGTCAGCCATAC 33115 28 92.9 32 ...AC....................... AATATAGATAAAGCCTAGTAATAGTGTAGGCA 33175 28 92.9 32 ...AC....................... GTATTTGCGTCTATTTGCGTTTGATTTGTTTG 33235 28 92.9 32 ...AC....................... TCTTCTGAAATTGGGGTTTTTACCAAATACTC 33295 28 92.9 32 ...AC....................... TTTAGTTAGCCCAACAAGAAATTGATCAAGAA 33355 28 89.3 32 ....T.......AT.............. TTTCTTTAATAGGTCTCTTTCATTGCCAATGA 33415 28 89.3 32 ....T.......AT.............. ATCAGGCAAAAAAATATGGCGCTTTAAATATA 33475 28 89.3 32 ....T.......AT.............. TGGGCCGAAAGTTGAAAGATATTGAATGACTT 33535 28 89.3 32 ....T.......AT.............. AACGATCGCATCATAGTCAACAATCTCGGTGC 33595 28 89.3 32 ....T.......AT.............. TGCATAAGAAACTAGTGCCAAGATTCCGAAAA 33655 28 89.3 32 ....T.......AT.............. AAAAAATGTTGGTGCAAGTCGAGTATCATCAA 33715 28 85.7 32 ....T.......AT...C.......... TTACAAAATCAGATAATTGAATTTATCTAATT 33775 28 89.3 32 ....T.......AT.............. AAATGATGAAGGGCATAAGGTATTAGCTCATA 33835 28 89.3 32 ....T.......AT.............. CACATATAACCTAATTGCTGCCAATCATATCC 33895 28 89.3 32 ....T.......AT.............. TGTTTACGAATCAGCCACTTTGCATGGTGTTA 33955 28 89.3 32 ....T.......AT.............. ATCAGGTCAGCCATTCCTCCAAGAGTTTCACT 34015 28 96.4 32 ....C....................... AATGACATACTCAACGGATTCAGGAAGTCTGA 34075 28 92.9 32 ...AC....................... TCTAGAAACAGATTTCCTGATGCACCTACACT 34135 28 78.6 0 ...AC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================= ================== 54 28 96.6 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCCTTTCACGAATCTTGGTGGGATGGCGTCAATTAAACTAAACACATAAGCAGTTGATATAATTTAAAATAAATTTTATTCAACCAAACACCATACAAAATACCATACAAAAGCATTTTATTTAAATCGCAACTAACTCAGCTATTTTTTCCGCAACTATCTCCAACGTATCTTCAGATGTATCAAGACCACTTCTTGAAGCTAACATTGGACTGACATCTCTAAGTGCCTCGTACGTTGTATTATGTACAATTGGAATCAAACGGTTACCAGCTAGAAGAGTTGAAAGCTCTTTATCTGCTACACCTTCTTTAGGTAAGCGCGACAACAAAGCTGGTGTTACCAAAACGAGTCCAACTTTAGAATTAGCCAAACCTTTATCAATTGCTCTCATCATTGGAACACCCAAACCAAGGTCTTTTTCACTAAACCAAACTTTTACACCAGCAGCCTCTA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //