Array 1 344133-345481 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEII01000008.1 Pseudomonas aeruginosa strain Pae_CF67.10j CF67.10j_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 344133 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 344193 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 344253 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 344313 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 344373 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 344433 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 344493 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 344553 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 344613 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 344673 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 344733 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 344793 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 344853 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 344913 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 344973 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 345033 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 345093 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 345153 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 345213 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 345273 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 345333 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 345393 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 345454 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 356001-354356 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEII01000008.1 Pseudomonas aeruginosa strain Pae_CF67.10j CF67.10j_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 356000 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 355940 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 355880 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 355820 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 355760 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 355700 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 355640 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 355580 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 355520 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 355460 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 355400 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 355340 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 355279 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 355219 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 355159 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 355099 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 355039 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 354979 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 354919 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 354859 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 354803 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 354743 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 354683 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 354623 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 354563 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 354503 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 354443 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 354383 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //