Array 1 10182-10689 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEU01000025.1 Salinivibrio kushneri strain ML328A contig-100_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10182 28 96.4 32 .............G.............. GTTAGTCAACATGGCTCCGAACTATGGATCTG 10242 28 96.4 32 .............G.............. TCGCTCGATGCGCTGGCTCCAATGTCAGATAC 10302 28 100.0 32 ............................ TTTTGCCGCTTCTTGCACGCGCCGTGTCATAC 10362 28 100.0 32 ............................ TCTTCGCCCCAAAGCGAAACGGCGGACTTACT 10422 28 100.0 32 ............................ GAGTGGAGTGATTGGAGAATGAGCGGTAAAAA 10482 28 100.0 32 ............................ GAGCATGGCTTGCAGCTGATCACTGTTCAGGT 10542 28 100.0 32 ............................ TCATGCGCGATGGCGGCACTTTCGCCCATTTC 10602 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 10662 28 82.1 0 ...........G.........G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGCTACGATGAGGTGGAAGTAAAGCGTCGTTTGTTAGAAAACATTAAAACGGACGACAAACGCTGGTCACTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTTGCTTTGTACATCGAGCGGGAAACAACCAAACAGCCGCCAAACAAGGACCAACCGTTCACCTGTTATGGGCTCAGCCGACGAGAACCCGATCAGCAATCAGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTGGGGCTCTTTAAAAATAGACAGGAAATACAGTTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAATGGCCTGTTGTACCTGACGATTATTACGTTATTCTATT # Right flank : ACACAAGCCCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCAGAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 821-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEU01000005.1 Salinivibrio kushneri strain ML328A contig-100_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 820 28 100.0 32 ............................ TAAAGGGCCCGCTGCAAAGTTAAAACTCGATG 760 28 100.0 32 ............................ GTCGACTGACAACCAGCTCATACACAAAAAAG 700 28 100.0 32 ............................ GTTAAAGATGCGCAACACATCTATGCGATTGC 640 28 100.0 32 ............................ GGTAGGTAGGTGACGACCATCGCGTAAATGCT 580 28 100.0 32 ............................ TGACCGCCTTGCGCCTTGGTCGCGGTGTCGTT 520 28 100.0 32 ............................ ACTTGGGTGTCGATATCGACCTCGAAGTTACC 460 28 92.9 32 .............T...........G.. GTACATCGCTTCATCAGTGATGCGAGGTTTGG 400 28 100.0 33 ............................ CATCACGCGATCCTTCGTAAGTTATGAAACTTA 339 28 100.0 32 ............................ ATAATCACCGGATATGGCGAGCAAATAAGCAT 279 28 100.0 32 ............................ ACTCTTTAAGCTCACGCTTCCACTTCAACAGT 219 28 100.0 32 ............................ ATAGCGCAGCCGGAAATATCATCCCCGTCACA 159 28 96.4 32 ...A........................ TGCGAAAAGTACGGCTCGATGCTTTCGCCGTT 99 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 39 28 82.1 0 ...........G.........G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACTTCGCATTAACGCAATCACATCGTCTTGGCATAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGAGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : GACACAAGCCCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39075-38752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEU01000012.1 Salinivibrio kushneri strain ML328A contig-100_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 39074 32 100.0 40 ................................ TAAGACTCAAAATATCCTTCACAAGGCCAAAAGCGTTTCG 39002 32 100.0 41 ................................ TAAGACCGTAATTGAGATACCGTCTTTGAGGCGACTCTCGT 38929 32 100.0 40 ................................ TAAGACGGTAAGGGTTGGGTGCCTGATCAAACGGATTGAT 38857 32 100.0 42 ................................ TAAGACGGAATGCGTCTTTACCTACAATGTAATTTTCTTTTT 38783 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 5 32 100.0 41 GTCCTCACGGACCACGCCCTGACTAAAGGGAT # Left flank : ACAATTTTACCCCAAGTGGTTTGCGTGGCAAAAAAAGCGGCGTCCAGCATTACGTCGGTTGGCGCGTCTTTGTCGTTATGCTATGGAGAGGGCGTAATTTATGGATAAACCCCTATGGTTAATCAGCTACGATGTGAGCCATCCCAAGCGGCTACGGCGTATTTATCAATATTGCAGCCAGAACGGTTGGCCGTTACAAAAGTCCGTGTTTGTGTTTGCGCTCAATAAAGCGGAAAAAGCACAGGCTTGTCAGGAGCTTATTGACTTGCTTGACAGTGATGAAGATAAGCTATTGTGTATTCCTTTTAATCCCACCGCGGGCAGCTTTCATCTGATGCCGCCCACTGACCTGGTGATTGCCCATGATGATCCCCGCTTAGCTCGGTTCGTTCAATAACACGGCATGGAATTTGCTTGATTTTAAAAGTTATCCACTGTTTAAAACGCCTGTTTATTTTGCGACTTGCAAAGGAAAAAACAATCAGTTATAAATAATAATA # Right flank : CGATAGGAAGGGCCTAGGTTATAGAATCTTAGGCGCGAGGATCGTTAGCGGTAAAAAAGGCCACATGGTAAACCATGTGGCCTTTTGCGTGTTCCCGTCGGCTAAGTCGTCTAACGGGTCGCGTTTTTATACTGAATATTGCCAGGCGCAATCGTTAGGCCTTTATACACATAACCCGCTCTGTTGACTTTCCGCTTGTGCACATTATTAATGGTATAGTACTGGCCTAATTTCTTACCCAGCTTGTCGGTGATTTGCTTGTTGGTCTCTTTTAACAAGCGATTCCATAAATTTTTGTGCCGTTTTCTCAGCTCATCAAGCGGTCGCTCTAAGTCGCTGTTGAACAGAATGTCTGTATCTTTTCCATCGCCTTGGAACAACCAGCGCTTGCGGGCTACGCCCGAATCCGTGTCATATTTTACGATTTCCTCTGCGGTTTCTTCGGCGAGCTCTACCCATCTCACCAGATCCCAATCGTCGCGCTCGCTTGGCAATGCCGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 43392-42218 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEU01000012.1 Salinivibrio kushneri strain ML328A contig-100_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 43391 38 100.0 34 ...................................... GGAACCAATCATCAAGTTCAAATGGAGACGTTAA 43319 38 100.0 35 ...................................... TTTTGCACGACGGTAAAACTCTCGGATCTTCTTAC 43246 38 100.0 35 ...................................... TACCCCTCTTGGGATTGGAAACGGTGAGCAACCAA 43173 38 100.0 34 ...................................... AGAAGTTCTCTACAGTATCGTTCAGGTGAGTATC 43101 38 100.0 34 ...................................... CGAAGCTATTACGTGACCGTGTAAATGGTGTGGT 43029 38 100.0 36 ...................................... CAGATTGTGGTTCCTGCGTATGTTTTCATAGCTTTA 42955 38 100.0 33 ...................................... TGTACCGTTCGAATACTACTAGATTGTCGTTTT 42884 38 100.0 34 ...................................... CGAAGTCGACTATTATCTTCATCGTCAGATGCAT 42812 38 100.0 33 ...................................... GATATCGGAAGACCAATCTGACACTGAGATGTA 42741 38 100.0 34 ...................................... CATAATGCCATCTGGATAGTGAATCGTGATTTAG 42669 38 86.8 34 ..............T........G.........G.T.G GTAGCGCCTAGGTCCTAGACTCCTAGGCCCTAGG 42597 36 76.3 34 A..T.G.T--TT..T....................... TTATTTGCTCGTTTAGTTGCTCAAACTCTGGCTT 42527 38 89.5 19 ..............T..................G.T.G GTAGTGCCTAGGCCCTAGG Deletion [42471] 42470 36 76.3 34 A..T.T.T--TT.......................A.. TCTATGCGCGTGTCCTCAATGACATTAAGGAGCC 42400 38 97.4 35 ..............T....................... TGAATGCGTCAACACGCATCGCTGAGAATACTGAA 42327 38 100.0 34 ...................................... TCCGCGTCAATGATGTTTTAACGCTTCTCGGTGG 42255 38 84.2 0 ..............T.......TC.........G.T.G | ========== ====== ====== ====== ====================================== ==================================== ================== 17 38 94.7 33 GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Left flank : ATTTATGTGGGGAATGATCAGATTGTCCATTTAAATGGCGACGGTCGAGTCGAAGCCGTGTCGCCGGCGCGTTTTTTACAACGCCTGGGTGGCTTTAACCCAGCGATCAGTATTTATGTTTCATGCCGCGATAAGCAAGCCGTCGGCTCACCGGCGGCTGCCGCGCAGGCGATGCAGGCGATAGGCAAGCGTCAAGACTACAATGTGCTGTTTGACAACTGTCATCAATTTTCGTCATGGTGTTTGTCTGATAACCGTGCAAACAGTGACAGTTTTACCTGGATGCTAAAAGACACCGCTAAGGCGCATTTGCACGCCAATACCTGGCGCGTGTGGGATTGGGAAGATTAAAAATAAATCAATAAGCCGCTCAGTCGCTTACGCGCGGGAATAATAAAATGGCACGTCATTTGCTTATTTTGTTAAAATTAAGCGTGTTTAAAACGCTTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAAATTGAAATA # Right flank : GCAGTGCCTAGGTCCTAGAACCCTAGGCCCTAGGATCTTTATTTCGTGCCCTGACGAAAGCGAACCTCCTTGTGCTTGATTTTTCTGCCATCACCAATTGGTGATCCGTGCGCTGGCGTCGAATAATCGATAAGATTATCCTCATCAGTTGCCCGCGATACTGGGCAGCGTTTAGCGACCCATTACCTCAGCCCCATAAGGAGATGCCATGCAACACGTCCATATCAATTTGGTCTCGAACCAACTGCTCCCGAATCTTATTCCCGCACTGGGCGACAACGCCTGCACGCACGTGATCCTGGTGCTTGGCGATCACACGCTCAAAGCGCGCGCCGAGGCGTTAGCCGATATGTATCGTGATCGCGATATTGAAGTGACACTCTTTGAAGGCCGTAGTAGTCATGATGTGGCGGCGCTGAAACAACAAGCGCGCGAGGTGATCGATCGTCTCAGCACCGAGTTTGCGGATATGCGCTGGATATTGAATGCCACCGGCGGCA # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //