Array 1 953802-954805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015574.1 Salmonella enterica strain FORC_038 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 953802 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 953863 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 953924 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 953985 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 954046 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 954107 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 954168 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 954229 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 954290 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 954351 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 954412 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 954473 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 954534 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 954595 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 954656 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 954717 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 954778 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 971075-973118 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015574.1 Salmonella enterica strain FORC_038 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 971075 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 971136 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 971197 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 971258 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 971319 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 971380 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 971441 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 971502 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 971563 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 971624 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 971685 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 971746 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 971807 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 971868 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 971929 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 971990 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 972051 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 972112 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 972173 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 972234 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 972295 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 972357 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 972418 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 972479 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 972540 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 972601 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 972662 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 972723 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 972784 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 972845 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 972906 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 972967 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 973028 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 973089 29 93.1 0 A...........T................ | A [973115] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //