Array 1 68370-66028 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRPX01000007.1 Parabacteroides merdae strain AF33-34 AF33-34.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 68369 32 100.0 34 ................................ AGACCAAGCACGAGACTGCGCATTCTCCTCTTTT 68303 32 100.0 34 ................................ TGAGATTAATGATATTAATGAGCACGTTAATTTG 68237 32 100.0 35 ................................ TCCACAGCAAGGTATTGCTCCTCTTGTAGGTTTGA 68170 32 100.0 34 ................................ TTACTTTTAAGAAAAAACAAACTCCCGCTCCCGT 68104 32 100.0 38 ................................ CCACTATTGAACGTAATGACGTTATCATCGACCGTGAG 68034 32 100.0 33 ................................ CCACCTTTTCTGGTGCTGTTGCTGTGGCTTGCT 67969 32 100.0 33 ................................ ACGATAAGTCAACCATTTAGGAAGAATGCTATC 67904 32 100.0 34 ................................ CTAAAAATGAATATGGTTATGAAACGCTTCGTAA 67838 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATAGGCATG 67773 32 100.0 34 ................................ TTTTTGAGCAGCAATAGCACGTTTCTGACGCTTA 67707 32 100.0 34 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATGA 67641 32 100.0 34 ................................ ATTTTGATTGTACCGCGCAGTTACCTATTTCTCG 67575 32 100.0 33 ................................ ATTTTGATTGTACTGCTCAATTACCTATTTCTC 67510 32 100.0 33 ................................ CCTGTTACGCATTTTAAGGATATACTTAAGGTC 67445 32 100.0 34 ................................ AAATATAGAACATCAAGATATCCAATACGCTAAG 67379 32 100.0 34 ................................ ATGGTCAAGCCTCCTCAATTGTTTTATTGTTGAT 67313 32 100.0 33 ................................ ACGGTACGTTAACCACTTAGGCAGAACACTGTC 67248 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 67183 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 67118 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 67051 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 66985 32 100.0 33 ................................ TATTGTGGCAGGAGAAGATGATCCTGAAAAATG 66920 32 100.0 34 ................................ TTGAGACGGATAAAACACTTGGAGCTAATGCTAT 66854 32 100.0 35 ................................ TTGACAGTGATAACAGTAGCGTAATAAGTTTGCAA 66787 32 100.0 35 ................................ TGTAAAGGATAGACAGGATAATGCAGGGAAAGAAA 66720 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 66655 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 66588 32 100.0 34 ................................ ATGGAAAAGAGTAGGGAGGTCGAAAGCGTGATAT 66522 32 100.0 34 ................................ AGGAACGGGTAAACATACTTGAATATGCCGCTTT 66456 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 66391 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 66326 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 66259 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 66191 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 66125 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 66059 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ====================================== ================== 36 32 99.6 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 75798-74050 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRPX01000007.1 Parabacteroides merdae strain AF33-34 AF33-34.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 75797 32 100.0 32 ................................ CAAACCAGACATCTTTATAGCATTGTCAGAAG 75733 32 100.0 35 ................................ TTACATCGTTGCGTTTCCAAACTCCATTTGTTAAT 75666 32 100.0 33 ................................ ACGGCTACGAAAATACGAACTATCTATTTCAAT 75601 32 100.0 34 ................................ ACAAACATGAGCATAAGCTTCAGCCCATTTTTCA 75535 32 100.0 32 ................................ AGGCTTTTGAATCTGGTAAGGATTTGAATACG 75471 32 100.0 32 ................................ ATCAGAAGATGATCGCACAACGACAACACGAT 75407 32 100.0 35 ................................ GACATTTACTATAAAAAGGTATACGTTTACCGTTT 75340 32 100.0 34 ................................ ATTTTGATTGTACTGCACAGTTACCTATTTCTCG 75274 32 100.0 33 ................................ CGGAGCAGGTAGTAATAATAAATATCTAGCCGG 75209 32 100.0 35 ................................ GGGATGTCAGAAGATGGTATTACAGGCGTGAATCC 75142 32 100.0 33 ................................ CATGATGGCACGAGTCGCCAAAGCATTGGCCTT 75077 32 100.0 34 ................................ CAGGCAACAGAACCGCCGCCCCCACCTCCAGAAG 75011 32 100.0 34 ................................ ACTATTTGAGCAATGTGCCCAACAGTTATATCGT 74945 32 100.0 36 ................................ GCTGACGCTCATTTGGTATATTTCGCCACGCCTAAA 74877 32 100.0 34 ................................ CTTAAAAGTAAGAATAACAGGAGTTTTAGAACAC 74811 32 100.0 35 ................................ GTCAATCTGAAAGTAAGACCATGCTTTTTGTATAA 74744 32 100.0 33 ................................ AGGCACATGAAGTAGGTAAGGACTTGAATACTG 74679 32 100.0 34 ................................ CGAAATATGTTTTATAACATATAGTCGGTTTTTG 74613 32 100.0 34 ................................ ACGAATATATATACGGTCAAAATCCAAGGCCTTT 74547 32 100.0 34 ................................ TAATTCGAATCGTAATTATGGTGGATCAGCTAAA 74481 32 100.0 35 ................................ CCCGACCAAGCATGGACAGTCACCGGCAAAACCAA 74414 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 74350 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 74284 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 74217 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 74152 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 74081 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 27 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.50,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //