Array 1 4540-6155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHET010000126.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-30 NODE_126_length_12588_cov_2.199021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4540 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 4602 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 4663 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 4724 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 4785 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 4846 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 4907 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 4968 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 5029 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 5090 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 5151 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 5212 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 5273 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 5334 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 5395 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 5456 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 5517 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 5578 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 5640 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 5701 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 5762 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 5823 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 5884 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 5945 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 6006 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 6067 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 6128 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 866-2763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHET010000402.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-30 NODE_402_length_3533_cov_1.889313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 866 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 927 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 988 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1049 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1111 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1172 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1233 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1294 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1355 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1416 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1477 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1538 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1599 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1660 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1721 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 1782 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 1843 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 1904 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 1965 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2026 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2084 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2145 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2206 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2267 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2328 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2389 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2450 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2511 29 100.0 11 ............................. CGGCCAGCCAT Deletion [2551] 2551 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 2612 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2673 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2734 29 93.1 0 A...........T................ | A [2760] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //