Array 1 13124-14412 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRX01000031.1 Rhodothalassium salexigens DSM 2132 scaffold0031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13124 36 100.0 30 .................................... GGCCTGAACGACAAAGCCGATCCGGAGCTT 13190 36 100.0 30 .................................... AGACCGAACCAACGGCAGGAGTAGCAGCAT 13256 36 100.0 30 .................................... GCCCTCCGGCGGCGCCAGCGACCGAGGGGG 13322 36 100.0 30 .................................... TGCGTGTGCTCGTCATATTCGTGGCGGATT 13388 36 100.0 30 .................................... TAGTTGTGTCGCCTGCCTGGCCTAGCCCGG 13454 36 100.0 30 .................................... CACCAGGCCAATGGCGGTGAGCACACCGGG 13520 36 100.0 30 .................................... GAAATACTTGGCGGCCAACTCGTCGGCGCA 13586 36 100.0 30 .................................... CGATGGTCGGAAAGACGTGTTGCGCGAGGG 13652 36 100.0 30 .................................... GACACGGTGAACCGGGTCACGTCCGAGCGC 13718 36 100.0 30 .................................... TCAACAAATTTCCTCATACCGCAGCAAATT 13784 36 100.0 30 .................................... TGTTTGCTCTTGGTGACGTTCAATATACGC 13850 36 100.0 30 .................................... CGCATCGAGCAAGGCCCGCCTGTTCGGGTC 13916 36 100.0 30 .................................... GTCGGCCAGATAGTCCAGCTGCTCGAAGCG 13982 36 100.0 29 .................................... TGTGGCCGCGGACTCTCGCAGTTGGTCGC 14047 36 100.0 30 .................................... ACAGGCGGTGAAAGCCGCGCCGGCGGCGGG 14113 36 100.0 30 .................................... GCCGACACCGACCGGCCGTCGGCGCGCGCC 14179 36 100.0 30 .................................... CGGGGCGTTGTCGATGTCATCCTGGGGCAC 14245 36 100.0 30 .................................... GAAAAAGCTGCGCGAAGCCTTTGCGACGGC 14311 36 100.0 30 .................................... CCGGCATTGGCGCAAGCCTTGGCGGGCGAT 14377 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Left flank : TCCAATTGGTTCGGGGCGCTTCGCCCTGAACCCATTGGTCGAATGAACGGCATTGGGGGGCACCTCAAGAACCCGAGGGCAGCACAAGGTAATGTCTACGATATTGAGCGGGTATCGGATGATGTGGCTCTATGTGATGTTCGACCTGCCGGTTTTGACCCCTGACGAACGCCGTCGGGCGACCCGGTTTCGCAAGACTTTGCTCGATTGCGGTTTTGAGATGGCGCAATTCTCGGTTTACTTGCGCTTCTGCGATAGTAAGGAAACTGCCGAAACTCATATCCGCAAGGTGCAGTCAGTCCTGCCGCCTGCGGGTTGTGTCCACATCATCACTATTACCGACAAACAGTATGGAAACGCACGGATCTTCCAAGGAACGATGCAGAAACGCCCCCCAGAAAACCCGGATCAATTGGTGCTTTTGTGATCAATCGGGGTTGTTTTTTGGCGTTCAGAAAAAAAGAAAAAGCCCTGAAAAACAGGGCTTTAGGTGAGGATCT # Right flank : CGTTAGAATCACGGCTAAGAAAGGAAAGCCCCATATCATTTCTTAGTGCGCCGGCCAAGGAAAGGGGCCTTTTTCAGACATGGCGTTATCACCGGAGCCATCACGGTTGGGGCAGCGCGTGGCCATTTCGACCGCGGGTGAGGGCGCAGAGGCGTTCGTGCCCCCTCCCTTGCCGCCGGTGCCGTCTGTCAGGATGGACCGGCTCTACCGTCCACTCGAGCGCGCAAACCGCGCGATCGGACGGCTCGATGGCGTGACGTCCATCCTGCCCGACACCCCGCTTTTCCTTCAAATGTACGTTCGAAAAGAGGCGCTGCTTTCGTCGCAGATCGAGAGTACACAGTCATCGCTCTCCGACCTGCTGCAGCAGGTCCTTGAGAACGGCGACTGGGAGGCATGGCTGGAGTTTTTCCTCGACGGTATCGCCGAGACGTCTCTGCAGGCATCCGAGGCGGCGCGCGAGATTCTTGCGCTTTTCGAAGCTGATCGGCACCGGATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGCTAGCCGATTTGGGATCGAGGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 15050-17762 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRRX01000037.1 Rhodothalassium salexigens DSM 2132 scaffold0037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15050 29 100.0 32 ............................. GCGTCGCCGCCGCCGCCGACTCGGTCAGCCTC 15111 29 100.0 32 ............................. TCTCGGGCATCCTTCGCGATCAAAGTGTTGCC 15172 29 100.0 32 ............................. CGAGGCAAATATCGCGGCGCTGGCACGCGACT 15233 29 100.0 32 ............................. CTATAAAGAAAAGAAAACGAACACGTGAAAGA 15294 29 100.0 32 ............................. CCGCTTCTCGGCCCGAAATTTCGAGAGCAACC 15355 29 100.0 32 ............................. GTGTATAACCTGGCCTGGTCTCGGCCCAAGCC 15416 29 100.0 32 ............................. GCAATTGCGACGGCGGTGATCGGGGGCGTCAT 15477 29 100.0 32 ............................. GCGACATCTATGCCGCGATCCTGGAGATCTCG 15538 29 100.0 32 ............................. GCGCATTCGGCCTGGTCGACGACACCACCGAG 15599 29 100.0 32 ............................. GAGCGGCGCGGGCTGAAAACCGAGATCTATGC 15660 29 100.0 32 ............................. GAGCGGCGCGGGCTGAAAACCGAGATCTATGC 15721 29 100.0 32 ............................. TCATGGGCATCCTGCGCGACCAATGTGTTGCC 15782 29 100.0 32 ............................. TGATCCGTCCATGATCGACAATCAGTCAGATT 15843 29 100.0 32 ............................. TGCCAACGCGGTATGTGCTGACCGTGTTTCGT 15904 29 100.0 32 ............................. ACCCACGGCAACGCGCGAATAGCGAGTGCTGG 15965 29 100.0 32 ............................. GCCGGCACAACTGACCACGCGCTCGACTGGTC 16026 29 100.0 32 ............................. GGCGCCTATGTGGCGCCGCCGGCCGAGGATGA 16087 29 100.0 32 ............................. GGGGCGACGTGCAGCCGCCAGAGATCGAGGGG 16148 29 100.0 32 ............................. GCGTTTCGCAACGGAAATTGACGCCGGCACAG 16209 29 100.0 32 ............................. ATCAACCGGCAGGATCGGGAGTTGTGGGAAGC 16270 29 100.0 32 ............................. TCTGGGACATGATGTCCGCCAGCGGCGACCTT 16331 29 100.0 32 ............................. GCACGGGTTCGAGAGGCAGATCATCAAACCCG 16392 29 100.0 32 ............................. GGGGCTTTTTTATGTCTGCGAAGTCGATTGCG 16453 29 100.0 32 ............................. CCGTCCAAAAAGACCGAGGCGAAGATGCGCCA 16514 29 100.0 32 ............................. ACCGCCACGCCCCGCGCGGCGGTGACGGCTGA 16575 29 100.0 32 ............................. TAAAATCGCCGGGCCAATCTTTGACGATATCG 16636 29 100.0 32 ............................. GGTCGACGGCGCGTGCGTTGGCAATCGGAGGA 16697 29 100.0 32 ............................. GAATGGCGCGCTTATACATTAGACGGAGTCTA 16758 29 100.0 32 ............................. CGCAGGTCCTGGCTGTTATCCGTAAAATCCAG 16819 29 100.0 32 ............................. ATTACCCGCTGGCGCGCGCCCACCTCTCCGAA 16880 29 100.0 32 ............................. GCCGCCAGCGGGGACCTTTTGCGACCGCTGAT 16941 29 100.0 32 ............................. GCTTCGACGGCTAAAAGGGGGTCGGGATGGTC 17002 29 100.0 32 ............................. GTTTCTTTGCTCGGCTTTTCGATCTTGCCGTT 17063 29 100.0 32 ............................. GCAATACCTGCCAGAATAAGCGGACTCATCGC 17124 29 100.0 32 ............................. ACGCTGAACCCGTCTACATTCTTGTTGGACGG 17185 29 100.0 32 ............................. AATACGAGGTCCTCTGACTCGTCTTCCCTGTC 17246 29 100.0 32 ............................. TACGTGCGCTCGACCACGTAGTAGGTCGTGTC 17307 29 100.0 32 ............................. GTCGCACGTCACAAGAAAAATCGAGCGTGTCA 17368 29 100.0 32 ............................. ACTGGCCCACCATCCGCGTCGGTGACGTGAAT 17429 29 100.0 32 ............................. GCCGGCCAGCCGATCACCGCCACCCAGGGGTG 17490 29 100.0 32 ............................. GCGATCGCGCGCGAGCTGCAATGCGCGGTGCT 17551 29 100.0 32 ............................. CCGACCGCCTCGGCGATCTCCTCCAGGCACGG 17612 29 100.0 32 ............................. GGGCGAAATTGACCGCCGACGAAATTGCGCGA 17673 29 100.0 32 ............................. AAAGGGGCAAGCGAAAAATCGACCTTTTCTTC 17734 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 100.0 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : GACGCGCCGGCGGAAGCCCAACCGCCGGCGATCGCGGAGCCGACGTCGGGCGACATCGGGCACAGGGGATAGGCCGATGATGGTGATCGTGGTCGAAAATGTTCCGCCCCGTCTGCGCGGACGTCTGGCCGTGTGGCTGCTGGAGGTGCGTGCCGGTGTTTATGTGGGGGTCTATGGCCGCCGGACCCGCGAGATGATCTGGCGCCAGGTGGTTGACAATATCGGCGAAGGTAGCGGGGTACTGGCCTGGAACGCGCCCACCGATGCTGGGTTCGAGATCGAAACCTGCGGCCCCAACCGGCGCGAGCCGGTGGACTATGACGGTTTTCGGCTGGTAGCGTTCCGGCCGCAGGAACGGCTTGGCCCTCAAGACCACCAGAAAACCCGCGCCGATAATCGCTCCTGAAAACACTGAACTGGAACCGCTGAACAAAGGCGGAACCGTCGGTGGGTTGTTTGACATTGTAAAATGTGTTTAAGGTCAACGCTCTACAAGAAGA # Right flank : GCCCGGAGCGCAGAGCAAGCGCTGCGGTCTTGGGCGAAGAATGCGGGTGGATGCGAAGACCGGTCAAGCCGGAGAGGCGCATAAAACGGCGCTTGAGAGACCGGTACGGAACACCGTCGGGAGGGGGTGGCGGAGGAGGAGGGATTCGAACCCTCGGTACGCTTGCGCGCACAACGGTTTTCGAGACCGCCCCGTTCGACCGCTCCGGCACTCCTCCGCACGCGCGGTCACCCGTTCCCAGGCGAAGCGAGGGCGGACCCTACTCAAGCCACCGCACGCTGGCAAGGCCTGATTTGCGCTTTTCGACCCGACGTTGGCGCTTGACCGACCGGGCCGCTTGGCTATATCTAACCCGGTTCGGTGTCTCGGCGTGGGTCGGGGCACCGTTTGGCGTTCGCGTGCACGTCGGGCCAAGCGCCCCGACACCGGGCTTGGCCCGGCGCGCGAAGGTCCGACGCCCGGCATCGTCCGAGACCGCCCCGCCGAGCCGGGCGGCTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //