Array 1 3932867-3930094 **** Predicted by CRISPRDetect 2.4 *** >NC_016901.1 Shewanella baltica OS678, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3932866 28 100.0 32 ............................ AACAAGTCAACAGTCATGGCCGAACCAATATT 3932806 28 100.0 32 ............................ TTTAACTCTAGAAACTCTTCAGTCACAGTTTC 3932746 28 100.0 32 ............................ AACGATATGGCTGGGGTAGACCGTGAAGAACT 3932686 28 100.0 32 ............................ AGTACGTCACAGAGCAGATAAATAAGGGTGAA 3932626 28 100.0 32 ............................ TTACTGATAGTGAACTGGCGGCTAGTCTCACT 3932566 28 100.0 32 ............................ TGCGACGTTCTTGTCCAATAACTGCGCATGAC 3932506 28 100.0 32 ............................ TAACGGACAAGGTATCAGGCGTTGGTCTGTAA 3932446 28 100.0 32 ............................ ATCAAAGCAGGAGAGTCACGCACCCAAACACG 3932386 28 100.0 32 ............................ ACTCAACATTATAAGCAGTTTCAAATGAAATC 3932326 28 100.0 32 ............................ AGTTAACCCATGCCCCAGTCTGGGAGTATTGC 3932266 28 100.0 32 ............................ AATATCCAAGCAGTGATAGGTTAGAAATAAAT 3932206 28 100.0 32 ............................ TTTTTCATTAACCTTTAACTCTAGAAACTCTT 3932146 28 100.0 32 ............................ TCTAAGTATTGTTGTTACGTCTACTGCACCAT 3932086 28 100.0 32 ............................ ACAAGATGAAGCCCCATGAATTTTCTAAGGTG 3932026 28 100.0 32 ............................ GTTTGCAGAGTCCGCTGAGAAAGTCCCAACTG 3931966 28 100.0 32 ............................ GTTGTTGTTGATATACCCCTTAACTGTATTCC 3931906 28 100.0 32 ............................ AGTAATAAAAAAAGTGACCAACAAGTCAACAG 3931846 28 100.0 32 ............................ ACTTGATAGCCGCTGATATTTCATCGACATTA 3931786 28 100.0 32 ............................ GGTGATAAAAGAGTTTCATTTATTTCTAACCT 3931726 28 100.0 32 ............................ AGTATTACCACGAACCGACAAAAACGATTTAC 3931666 28 100.0 32 ............................ TATCCCGCATGGAGTCAAGCCTTGCGACCCTC 3931606 28 100.0 32 ............................ TGAGCTGAATTATAAGAAATGGCCGGTGAATT 3931546 28 100.0 32 ............................ TCGTCAATATCACTTCCTGACTGTATGGCTTG 3931486 28 100.0 32 ............................ AAAACTGCTGGTATAAAATGTATAACCGTTTA 3931426 28 100.0 32 ............................ CTTGATAACGCACAATCACCCTTGTATTGCGC 3931366 28 100.0 32 ............................ AGTGTGGTAATATGTGGATTATTTGGAGGAGT 3931306 28 100.0 32 ............................ AGTACGTCACAGAGCAGATAAATAAGGGCGAA 3931246 28 100.0 32 ............................ ATTTAGTGCGAGAAAATACGTGGGGTCGCTGT 3931186 28 100.0 32 ............................ GCTGACGGACGAAAAACGCGATAAGCTGGTTC 3931126 28 100.0 32 ............................ GATCATGGCGGTCGTTACTTCCGCCTCAATGG 3931066 28 100.0 32 ............................ TAAAAAACAGGACAACGACAATGGCGAGAAAA 3931006 28 100.0 32 ............................ ACTTTAAAACCGTCGCCAATAAACCAGTCTTT 3930946 28 100.0 32 ............................ AGCTGGCAAAAACAGTTTGAAGTTCGGCGCAA 3930886 28 100.0 32 ............................ GGCGGCGCTTTCGAGTGCCTCGCACCTACCAT 3930826 28 100.0 32 ............................ CATTGGCGCGGCCAATGGTTTGGCGTTGGATC 3930766 28 100.0 32 ............................ AATAGGTCATGCCACGGTAGATAGACGCTAAA 3930706 28 100.0 32 ............................ TGAATAGCCGCAGTGTTTTGGGTGACGCCTTG 3930646 28 100.0 32 ............................ AGACGGGGTGCGGGTGTTAGACGCGGGGGGAG 3930586 28 100.0 32 ............................ GTAATGGCCATGCATTGAAAGATATTCCAAAA 3930526 28 100.0 32 ............................ TAGATGGTCAGGATGGTGTTGATGGTGTTGGC 3930466 28 100.0 32 ............................ GTTATCAAATGGCGCATAACTCAGCCTCTGCC 3930406 28 100.0 32 ............................ CTGAGAGATTTTTGCAGGTGAAGCCTTAAGCT 3930346 28 100.0 32 ............................ TTTAGTCCACCTCCTTGAATTTGATTTTAATG 3930286 28 100.0 32 ............................ GCGCAAGAAGTTAATTATAGGAATGCTAGTTT 3930226 28 100.0 32 ............................ TCGTTAAAATCTTCAAACGGATCGAACGCTTC 3930166 28 89.3 17 ..................A...C...G. TTCATCAGTATGCGATT Deletion [3930122] 3930121 28 71.4 0 .....AT...AT......T.T.C.T... | ========== ====== ====== ====== ============================ ================================ ================== 47 28 99.2 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : GGAAGATTTAAAGGTAAGCAATTGGCTGCGTCATTTTACCGACTACTTGCATATCAGTAGTATCCGTCCCGTGCCCGAAAAAATAGAAGTTTATGTAGCTTATTCACGCCCAGCAATCCGTGCGAATAAAGCGCGGGAAATCGCTCGAAGAATGAAGCGTCATAATGAAACGTTAGAGCAAGCTACAGCGCATTTTGAAGGTTTTAAACCTAAAAAGACCAAAGCGCCCTTCGTTTATATGCAAAGTTACACTAAGGATTCGCGCTTTCCTTTATTTATTCAACAAACACATAGTGCTGTAGTAAAGGAGGGAAGTGTTTCGTTTGACAGTTATGGATTATCAAGCAGAGGCTATTTACCCAAGTTTTGACCTTATAATTTATGCTCTTTAACAAATCAAATAGAAACAGTGAGTTACTGCAGTGTGTTTTTCGTAAGGTAAAATAATGTTTTTTAGCCTAACGAATTGTAGTTACTCACTTTTAAACTAGTAATTTATT # Right flank : ATCTATGGCAAGTTGATTTTTGAGCGCGATTTTAATTGAGTGATTCTGCTATACTCCGCGCCAAGATATCAAATGACAAATCATTATTTTAGTTTTGTGTACAAGCGTGTGTACAAACTGATTGAACAACGAGTAAGACTTAATAAATATGTCTATAGAAATCAATAAGCGACGCACTTTTGCTATTATATCGCACCCCGACGCGGGTAAAACAACCATTACCGAAAAAGTGCTGTTATTCGGAAACGCTTTGCAAAAAGCGGGAACGGTTAAAGGCAAAAAATCGGGTCAGCATGCTAAGTCTGACTGGATGGAAATGGAGAAGGACCGTGGTATTTCTATTACTACGTCTGTGATGCAGTTCCCCTATGGTGGCGCCCTCGTTAACCTACTCGACACGCCTGGTCACGAAGACTTCTCTGAAGATACCTATCGTACTCTGACCGCTGTTGACTCCTGTCTGATGGTCATCGACTCCGCTAAGGGTGTTGAAGAGCGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //