Array 1 4252-5594 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKM01000030.1 Campylobacter fetus subsp. testudinum strain wqj3 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4252 30 100.0 36 .............................. AGAGGTCCTAATAGACACTAGCGGTACATTTTTTGT 4318 30 96.7 35 A............................. TCTGCTATGGGCAAAAATATAGAAGACAATTTGTT 4383 30 96.7 35 A............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTT 4448 30 96.7 35 A............................. GAAATTTTATAATCGTCAAAAATAATAGGATCAGA 4513 30 100.0 36 .............................. GATCAGTTGGCTTTTCTGGTTTAGTAGTGTTATCAT 4579 30 100.0 36 .............................. TTTAATGGTATTTCTTGCCATTTTTGGAAAATAAAA 4645 30 100.0 36 .............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATC 4711 30 100.0 36 .............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTA 4777 30 100.0 37 .............................. GCTTTAGGGTAAAAATAATTTTATCTTCATTTGCTAT 4844 30 100.0 35 .............................. GGAGTTTTTAAAAGAGGGTGAGCGCATACCAAAAA 4909 30 100.0 36 .............................. AGAAGAAAAGTTTATTAAATACAAAAGTATATCCTA 4975 30 100.0 35 .............................. TCATTACCTTATGTGAAAGGTATGGCTGGGATAAA 5040 30 100.0 36 .............................. GCCATTTCATTCTCGTTTATAGAAGGCTTAACGTGA 5106 30 100.0 35 .............................. AAGCCTAATTTAGGCTTTTATAAATGCTCTGACAT 5171 30 100.0 35 .............................. AGTTAGAGATGAAGAGGTAATAGCGACTTTTAGAA 5236 30 100.0 36 .............................. TTTAAGTCTAAACAAACAACTAAATTTACAACAACG 5302 30 100.0 36 .............................. AGTACCAACTGACCTAGCTGTTCTTGAGGATTTTAG 5368 30 100.0 36 .............................. AGTACCAACTGACCTAGCTGTTCTTGAGGATTTTAG 5434 30 100.0 36 .............................. AAAAATTAAAAAAAACAAAAGAGGATATGAATAAAA 5500 30 100.0 35 .............................. ACGTACTATCTCTAAAAAATGCTATGGCTTTACTG 5565 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.5 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTACACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAGTGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAGCTTTTCATAGTTTATCCTTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : TTTACAAGTAGCGAAAGCTTTAGCAATTTTCTAGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 11652-10376 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKM01000026.1 Campylobacter fetus subsp. testudinum strain wqj3 contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11651 30 100.0 36 .............................. TAACTAGTGGCAAATGGGCTAAGAGTTTTTATAAGT 11585 30 100.0 35 .............................. TCGGACTTTTTAAATATTTTAAACAAAATGACTGA 11520 30 100.0 35 .............................. AAGAAATGCTCAAATAACTTGTACATTTCTTTTAA 11455 30 100.0 35 .............................. ATAGAAAGATAAACTTTTGTAGGAGATACAAAATA 11390 30 93.3 36 ...............G.............T AGGATAAAAAGCTATACAAGCAAAGCAAGACAACTT 11324 30 100.0 36 .............................. TCTGTTATTTTATACTCTACCCCCGAGTAAAGAAAT 11258 30 100.0 36 .............................. CTAAAATTAAATTTAACGGCTCTTGTTTTTAGTGGC 11192 30 100.0 35 .............................. TAACTAGTATCTATAAATGACTTCTTAAGTACTTT 11127 30 100.0 35 .............................. CAAAAATACTCTTTGCACTCCTCTTTACTAAGCCC 11062 30 100.0 36 .............................. CTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCT 10996 30 100.0 37 .............................. ATCTTTACAAGCACGTCTCCCTCATATATTCTAATCC 10929 30 100.0 35 .............................. AAAGGAGCAAGGGCTTGGAAATGGTTTAGCAATCT 10864 30 100.0 35 .............................. GAATATAAAAGAATTGCTGAGTTTTTTTATAGGGC 10799 30 100.0 35 .............................. TGATATTCAGTGACGTTCTAAGCGTTGTTGATACT 10734 30 100.0 35 .............................. ATAGCATTGTGATAGTGTTTCCTACGTTTAAAGGC 10669 30 96.7 36 ...............G.............. CACATAACATAATAGCTGATATAAACTACAGATATA 10603 30 96.7 36 ...............G.............. GAAAATAAGTTAGTTAAACATAATTTTAAAGAGTCT 10537 30 100.0 36 .............................. TCAAATACCGCTTTGGATATATAGAAAAATTAACTT 10471 30 100.0 37 .............................. CTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 10404 29 73.3 0 ..........C....AGC.C..-..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 98.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAAGCGTAGCACCAAAAGAAGCGTATGAAAGCATA # Right flank : CACATAAAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAGAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 37-1483 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKM01000039.1 Campylobacter fetus subsp. testudinum strain wqj3 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 37 29 100.0 36 ............................. TGAATAAAACAGATAGTTCTGTTACTGCTAATTCTA 102 29 100.0 36 ............................. TAAATTTATATCTAAACTTTCTACAGATTCTTTCGT 167 29 100.0 37 ............................. TAATTCTCTTTATAGGGATAGATGTATGAGCGAAAAT 233 29 100.0 37 ............................. TATTTTTGACGAATGTGATCCAGACGGAGATGCGGAA 299 29 100.0 37 ............................. TCATTTATTAGTTTTTTCTCTAAAGCCACCAGAGCGT 365 29 100.0 37 ............................. TTGCTCTATAAGACCATTTTGTATAAAATGGTGGTGC 431 29 100.0 38 ............................. TACAAATATTTTTGAAAGCAAATACTTTGTCAAAATTT 498 29 100.0 37 ............................. TTAAAAATTGCCGTTTGCATTTTCTTTAAAGAAATGC 564 29 100.0 38 ............................. TCTCTGTGTAGAATTAGAAACAATATTTGCAAATTCAA 631 29 100.0 37 ............................. TTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 697 29 100.0 37 ............................. TTTATAAATAGCCTGTTCTATTTCACTTATCTCTTCC 763 29 100.0 38 ............................. CTTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 830 29 100.0 37 ............................. CGTTTTTTCCTTTAAAATATCGTGAGCTTCCTCTTCC 896 29 100.0 37 ............................. CTCGCCTATGAACAGAGCTAGTCCGTTTTCATTTATT 962 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1027 29 100.0 37 ............................. CATGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1093 29 100.0 36 ............................. CATGATACAAAGCGTGGTTGGTAGATATTATATTTC 1158 29 100.0 36 ............................. CAAAACATTTTTAGAGGCGTCTTTGGCTACTGCTTC 1223 29 100.0 37 ............................. CACGAAATTTCCGTTGATATAAAAAATAAGTTTAATG 1289 29 82.8 5 ..................A..ATA.C... TTTAA Deletion [1323] 1323 29 96.6 37 ............T................ CACTTTAGTATTTAAATAAGCCGTATTAAAAGCGTTT 1389 29 100.0 37 ............................. CCAAAGCAGGTTTTAGTTCATCACGTTAAGCCTTCTA 1455 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.1 36 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TGGTTGGAGAGCAAGGGATACAAAGTGGATCTAGTAG # Right flank : ACAAGTTCTTTTTTTAATGGAAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAAGAGATCACTATATGATAAAAAAGAGGTGATAAAATGGAAAATCGTAAACTTATTATAGGGTACTATGGAATAGAATGGGCTATAAAAGTTCCTGACTATGATGATAAAGGAACAAAAGGCTTAGGGATTATAGCCCCCATAACTTCAGTAAAAGACGGCAAAATAGTTGAAGTATTCGATATCCTTACTCCACACAAAGAGGATATAGATGATGCAAAAGAGTATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCACAAACTAATCATAAATTCACAGGCACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATTTGACGGCGACAGGCTAATAACAGCTTTTAAGCCGACGCAAGGATATATCAAGATATTTCAAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //