Array 1 2307957-2309480 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029753.1 Akkermansia muciniphila strain EB-AMDK-39 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2307957 31 100.0 34 ............................... CAAACGGTGAAACCTTTATAGAACAAACACGTGA 2308022 31 100.0 34 ............................... TTAAACTCAAGGTTTTCCCCTTCGAGCGTGTAGA 2308087 31 100.0 33 ............................... GATTGTGGCGTACTTAACGCCAATATGCTCCGG 2308151 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 2308216 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 2308281 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 2308346 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 2308411 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 2308475 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 2308540 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 2308605 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 2308670 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 2308735 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 2308800 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 2308865 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 2308930 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 2308995 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 2309060 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 2309125 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 2309190 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 2309255 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 2309319 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 2309384 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2309449 31 83.9 0 ....T................A..A....TA | G [2309462] ========== ====== ====== ====== =============================== ================================== ================== 24 31 99.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2508156-2512797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029753.1 Akkermansia muciniphila strain EB-AMDK-39 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2508156 31 100.0 33 ............................... ACCTGCGGCTATCCGCTAGACCTGCTGGACTAT 2508220 31 100.0 34 ............................... TTAAACTCAAGGTTTTCCCCTTCGAGCGCGTAGA 2508285 31 100.0 35 ............................... ATATACCCAGGAAGAACATAATATTTTACACAGTC 2508351 31 100.0 35 ............................... GGTAAGGGTTACCAACATGACGGGAAGGGTTTCTT 2508417 31 100.0 35 ............................... ATGAATCTCCTGCGCGTCCGGGTAGTAGTCATAGG 2508483 31 100.0 34 ............................... CTTCGGGGAACAAGGCCAATTTAGCATAGGTGTG 2508548 31 100.0 34 ............................... CGCAATGCGGGCAACGGCCATTTACGGGGGTTAC 2508613 31 100.0 34 ............................... GTCATGATGGATAGTGAGCAGAGCAAGAAAGCCT 2508678 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 2508743 31 100.0 34 ............................... CGGCTCGCAGAATATAGGCTGGAGTTGCCCGTTG 2508808 31 100.0 34 ............................... CCGTGGGAGTGCTCCAACTGCTTACGGGTACAGG 2508873 31 100.0 35 ............................... AAGACTTGTCGCAAAGGCTTTTTGTGAAGTTTCAG 2508939 31 100.0 32 ............................... CTGATAGGCTACCGCAACACTTGCCTAAATCC 2509002 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 2509067 31 100.0 35 ............................... CAAAATTTCCCCCATACAGCGGGCCGTATGAGGAA 2509133 31 100.0 33 ............................... CACGGAGGTGGGTTGAGAGAACTGGCTCTTGTC 2509197 31 100.0 34 ............................... GACGACGTGCTTAGTGCCGCCACCAAGATTGCTA 2509262 31 100.0 33 ............................... TGACCAAGCATGAACATCTTCTTTACACCGCGG 2509326 31 100.0 34 ............................... ACCGTTAATGGTATTGTTCACCCATTCGGGAGCA 2509391 31 100.0 34 ............................... TGGACAATAGCGGTAATCTTAGCGTTAGCCTTAT 2509456 31 100.0 34 ............................... ATGTCTCCATGCCGCATGGCCCAGGCACCATCCC 2509521 31 100.0 33 ............................... GAAGGTCTTTAGCGATTGCTTTGCCATCTAAGA 2509585 31 100.0 34 ............................... ATCATAGAGTTATCTTGCTTGTGTCAAGTTTGTT 2509650 31 100.0 34 ............................... TATTTGTTAAGGTTATAGGGGAGATTGAAAAATG 2509715 31 100.0 33 ............................... GGTGAAAGAATGGGGGTTACAAGCTCTCCTTCT 2509779 31 100.0 34 ............................... AAACTACGGAACTGATTGCGTAACAGTTTGAGCA 2509844 31 100.0 34 ............................... AGGCCAGAGGTAGGCACGATGTCAGCGACAGGGG 2509909 31 100.0 34 ............................... CACCTGGGCATTACACGGACCAGAGTAGCTGTCA 2509974 31 100.0 36 ............................... TCTATCCACGGGGTCCACGTAATCGGCGTAGGACTG 2510041 31 100.0 33 ............................... TACAACTTCGCGGCTGACTTGGAAGCCTCGCGG 2510105 31 100.0 34 ............................... ATAAGCTGAAATGGAACGGCTATGTAGTCGCCTT 2510170 31 100.0 34 ............................... CCCCCATGAATGCCTCTATAATTGCCCCGGTACG 2510235 31 100.0 33 ............................... TATCAGGAGAGTAATTTCTCCAATACATTTCTG 2510299 31 100.0 34 ............................... CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 2510364 31 100.0 34 ............................... TCCACCACGCCGGAGTTTCTCTTGTACATGGAGA 2510429 31 100.0 34 ............................... CCCTGTTCACCAACGGCGAGATAGGTACGGTGCA 2510494 31 100.0 34 ............................... AATGTCGTAGCCGCAGGCGGTAGCATATCCTATG 2510559 31 100.0 35 ............................... GTTGTCATGGTTGTGGGTGCGATTATAGGACCGGG 2510625 31 100.0 34 ............................... CGGCTTTTTCCACCTTGTCCAGCACGGAGGGCAT 2510690 31 100.0 34 ............................... CATTCCGTCCTCCATTTTTGGAGGGGATGAATTG 2510755 31 100.0 34 ............................... CCGTTAAAATCCTGCGTGATTTTATGGCTATCAG 2510820 31 100.0 33 ............................... TCTTACGCTTCCACTTCTTTCCGTGAAAATTTT 2510884 31 100.0 35 ............................... AATGCAAGTCTTTATCTCTTCGGGCCGAACGTTGA 2510950 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 2511016 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 2511080 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 2511145 31 100.0 34 ............................... TCCGGCTACCGACTGGGACCGGCTGCCGGAAACT 2511210 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 2511275 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 2511339 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 2511403 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 2511468 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 2511533 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 2511597 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 2511662 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 2511727 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 2511792 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 2511857 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 2511922 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 2511986 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 2512050 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 2512116 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 2512182 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 2512246 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 2512311 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 2512376 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 2512441 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 2512506 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 2512570 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 2512635 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 2512700 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 2512765 31 83.9 0 ........C....G........G....C..G | G,C [2512790,2512793] ========== ====== ====== ====== =============================== ==================================== ================== 72 31 99.7 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2521799-2524238 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029753.1 Akkermansia muciniphila strain EB-AMDK-39 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2521799 33 100.0 35 ................................. TCTTTGTTATCCACTATAGCTTATGTTTTGCTCCC 2521867 33 100.0 34 ................................. TATTTGTTTAGTTTAGTTTAGTTGTTGTACCTAT 2521934 33 100.0 35 ................................. TCTACCTCTTCCCGTTCGTAACCCGGGCAGGTGGA 2522002 33 100.0 34 ................................. TTTCAATACCTGTTCCATGTCGTACATTTTCAAT 2522069 33 100.0 34 ................................. CGTACCTAACATGAATAAGGGCAGGGGAATAACC 2522136 33 100.0 34 ................................. CGATAGGTACGACGGATAGCTCCTGGCGTAACGG 2522203 33 100.0 34 ................................. ACGTCCTGGCCGTTATTGCCATTGCCGTTGACAA 2522270 33 100.0 33 ................................. GGATTGAACTTAAACGCGATAGCATCCTTCGGA 2522336 33 100.0 34 ................................. CGCTTCATCCACGAATCCATGGCCCCGGCGATAC 2522403 33 100.0 33 ................................. CTCATACAACCCGGTAGCCTATCAGAGCGAACT 2522469 33 100.0 33 ................................. TCATCCTCCTGTGGGCCTACCGCGAACTGAACG 2522535 33 100.0 33 ................................. CGGTCGATGATTTCATTGACCCACACAGGCCCC 2522601 33 100.0 33 ................................. CATGTTTCGGGCAATGGACTTGGCCAAGGCACC 2522667 33 100.0 34 ................................. CATGAACCCGGTGCCTCCGGTTACGTCAACAGCA 2522734 33 100.0 34 ................................. ATGACCGGATAAGTTTAATTGTCGGAGCTTTGCT 2522801 33 100.0 34 ................................. ATTTTCAATCCCCACAGCATCACCTTGAGGTTGG 2522868 33 100.0 33 ................................. CCATGTCCTTGGTGGTCAGGGCCTGATACTCCG 2522934 33 100.0 34 ................................. CCCAGCGCGAAGTGCATTTAGAATCTTCTCCTGC 2523001 33 100.0 34 ................................. ACAAAAATGATGGAAAATAATATTGACAAGCCAG 2523068 33 100.0 33 ................................. CATAGCTCACCCCGGAGGTCGCGTCAACGGCTT 2523134 33 100.0 34 ................................. CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 2523201 33 100.0 34 ................................. CTATATTGTAACCACTAAGTGCAAGTTGGTAGAG 2523268 33 100.0 34 ................................. ACGTAACCGCGCCATTCTTCATGGCTGCGGGCTT 2523335 33 100.0 34 ................................. TTCTTTTTCCTTTGCATTGTAGTAAGTCGTTGAT 2523402 33 100.0 35 ................................. CCTAAAAATGGACATGTGGAGTCCACCCGCATTGT 2523470 33 100.0 34 ................................. CAAAAATATGGCAAGGTTCAGATTCCCCTTCGAG 2523537 33 100.0 34 ................................. CGCCTCAAAGCGGAGGGGGACGTCCCCGGTGGGT 2523604 33 100.0 34 ................................. ATAATTACCGTCCCCATCACATTTGACATTGAGC 2523671 33 100.0 35 ................................. TTCTTCCAATCCGGCTCTGGCCCGGTTCCAGCGTT 2523739 33 100.0 34 ................................. TGTGACTATTTGCTTATATATGAGATAGTCGGTT 2523806 33 100.0 34 ................................. TTTACGATGGATAATAGTGAGTATTGTGTATTAA 2523873 33 100.0 34 ................................. TCATGACACAAGGCAGTCACCTTAGGCTTTTCTG 2523940 33 100.0 34 ................................. CAATGAATCCGCACAGGCGGCGGCCTCCCGGAAG 2524007 33 100.0 33 ................................. ATCATGATGGATAGTAAGCAGGGCAAGAAAGCC 2524073 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 2524139 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 2524206 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 37 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2923399-2919412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029753.1 Akkermansia muciniphila strain EB-AMDK-39 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2923398 31 100.0 35 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGCCA 2923332 31 100.0 33 ............................... TTGTGGAGCAGTTTGGAAATGGCTAAATGGAGT 2923268 31 100.0 34 ............................... GCAATTATTGCACTTTACCGCATCCCCACGGCCA 2923203 31 100.0 34 ............................... GCTAAAGCTCATACTAGTAACTTTATGGCCGTAG 2923138 31 100.0 34 ............................... GTGTCGATGACGGCGGCCTGCTCCGTCTTCTTCT 2923073 31 100.0 33 ............................... AGTGTATTCCATGGGTAAATTCCTTTACTGATT 2923009 31 100.0 34 ............................... TTCGTTCATTGTATATTATGGTTAGGTTTTATTT 2922944 31 100.0 34 ............................... CGCCTGATGCGGGACTACGGAAAATACAGCGCAG 2922879 31 100.0 34 ............................... CGCGGAATCCGGGGATGCCAGGAACCTGACGGAG 2922814 31 100.0 34 ............................... GTGTGGAGTTCATTGCCCCACATGGGGCGACTAA 2922749 31 100.0 34 ............................... CAATCGGTTTCCTATAACGTAGGCTACGCGGTCG 2922684 31 100.0 34 ............................... AAAGGCGGAGTAGGAGTCAACGTTGGCCAGCTCC 2922619 31 100.0 34 ............................... GGGCTCCTTGTCATATCCCTCTATGCAGGTGACG 2922554 31 100.0 33 ............................... GACAAGTCCCAGGTGAACCGAGCCCTTGCCATG 2922490 31 100.0 34 ............................... CGGGGGAACAATGATGACCGGAGAATCTTGTTGT 2922425 31 100.0 34 ............................... CCTACCTCAAGCTCTGGCAGTCCTCCAGCGAAGA 2922360 31 100.0 33 ............................... CGTGATATAGAAACTGCAACCGCGCCGGGTCAT 2922296 31 100.0 34 ............................... TAATACGGAATACCAGCACAAAATCTGCGTGAAG 2922231 31 100.0 34 ............................... GGAGACCAGCCACTGAATGAGGGCTGGGACAAGG 2922166 31 100.0 35 ............................... TTCAACGACTTGTCGGACGTGTTGCGAGAGTACAA 2922100 31 100.0 34 ............................... CTATTGTGGAATACAAACCAACGGGGGTTAGTAG 2922035 31 100.0 33 ............................... CCCTAACAGGAAGCCAGTCAGCCAGGATGATGA 2921971 31 100.0 33 ............................... CAAGGCATCAATTACGAGGTAGGCACTGGTCTG 2921907 31 100.0 34 ............................... TGTTTCAGGTCCACGTTGGAGTCATAGATGGTAT 2921842 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 2921777 31 100.0 33 ............................... CTATATTGTAACCACTAAGTGCAAGTTGGTAGA 2921713 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 2921649 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 2921585 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 2921520 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 2921455 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 2921390 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 2921326 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 2921261 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 2921196 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 2921132 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2921066 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2921000 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 2920935 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 2920870 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 2920804 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 2920740 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 2920676 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 2920611 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 2920546 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 2920479 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 2920414 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 2920349 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 2920284 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2920219 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 2920154 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2920089 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2920025 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 2919959 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2919894 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2919829 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2919765 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2919700 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2919636 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2919572 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2919507 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2919442 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 62 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //