Array 1 3037230-3035692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064263.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3037229 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3037168 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3037107 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3037046 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3036985 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3036923 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3036862 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3036801 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3036740 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3036679 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3036618 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3036557 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3036496 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3036435 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3036374 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3036313 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3036252 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3036190 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3036087 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3036026 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3035965 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3035904 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3035843 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3035782 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3035721 29 96.6 0 A............................ | A [3035694] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3055404-3053362 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP064263.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3055403 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3055342 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3055281 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3055220 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3055159 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3055098 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3055037 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3054976 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3054915 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3054854 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3054793 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3054732 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3054671 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3054610 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3054549 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3054488 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3054427 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3054366 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3054305 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3054244 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3054183 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3054122 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3054061 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3054000 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3053939 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3053877 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3053816 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3053755 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3053694 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3053633 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3053572 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3053511 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3053450 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3053389 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //