Array 1 515-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPZX01000184.1 Escherichia coli strain EELTKB293 NODE_865_length_484_cov_64.814049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 514 28 100.0 37 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATNNNNNNNN 449 28 92.9 32 NN.......................... ACATCGACCGGGCCTGACCTCCTGCCTCCACC 389 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 329 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 269 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 209 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 149 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 89 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 9 28 99.2 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 162079-162953 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPZX01000204.1 Escherichia coli strain EELTKB293 NODE_1110_length_307724_cov_71.131470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 162079 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 162139 28 100.0 33 ............................ CTGCTCGACCCTGTCATGCGGCGCATCCGGCTC 162200 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 162260 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 162320 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 162380 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 162440 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 162500 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 162560 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 162620 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 162680 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 162740 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 162800 28 96.4 38 ...........................N NNNNNNNNNGAGGCGCTCACACTCACGCGGAGTGAGAC 162866 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 162926 27 92.9 0 .......................-C... | T [162946] ========== ====== ====== ====== ============================ ====================================== ================== 15 28 99.3 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //