Array 1 163455-160924 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNU01000040.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016013 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163454 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163393 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163332 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163271 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163210 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163149 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163088 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163027 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162966 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162905 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162844 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162783 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162722 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162661 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162600 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162539 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162478 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162417 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162356 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162295 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162234 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162173 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162112 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162051 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161990 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161929 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161868 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161807 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161746 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161685 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161624 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161563 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161502 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161441 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161380 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161319 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161258 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161197 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161136 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161075 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161014 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160953 29 93.1 0 A...........T................ | A [160926] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181577-179962 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNU01000040.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016013 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181576 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181515 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181454 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181393 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181332 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181271 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181210 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181149 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181088 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181027 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180966 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180905 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180844 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180783 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180722 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180661 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180600 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180539 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180478 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180416 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180355 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180294 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180233 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180172 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180111 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180050 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179989 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //