Array 1 1-205 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000675.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1386, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 25 89.3 32 ---......................... ATAGCGTAATACCATCGTCGGGTTAATATGCT 58 28 100.0 32 ............................ TGAGCGCGCCCCACTGCGCGGCGTTGAGCGTA 118 28 100.0 32 ............................ TGGTATCAAAAGCAGGTTGAGAATCTCGACAC 178 28 92.9 0 ..........................NN | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : NNNNNNNNCTATTTTTCCCATCAACTAAACGGCGACTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGTCAATCTCTTCCTGAGTCGCTTCACAATTTTTCTAAGCTGCCTGTGCGGCAGTGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000744.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 144 28 89.3 32 NNN......................... AGATAGAGCTAGTGGAACAAGGAGGGTGGTTA 84 28 100.0 32 ............................ TAAAAACACCGTTGTAAATAATACTTTTAGTG 24 24 85.7 0 ........................---- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 91.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTAAGCTGCCTGTGCGGCAGTGAACACTTGAATCATAGCCGTTAGCGCATCTTTAACTTTCTAAGCTGCCTGTGCGGCAGTGAACAATATTGGGAGTCTATTGGTGGTACTTGGGGTTTTCTAAGCTGCCTGTGCGGCAGTGAACTACGCATATTTACTTCCTCGTCTCTTGAGNNNNNN # Right flank : A # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 181-326 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000744.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1933, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 241 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 301 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAAGCTGCCTGTGCGGCAGTGAACCACTAAAAGTATTATTTACAACGGTGTTTTTATTTCTAAGCTGCCTGTGCGGCAGTGAACTAACCACCCTCCTTGTTCCACTAGCTCTATCTTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNCTCAAGAGACGAGGAAGTAAATATGCGTAG # Right flank : | # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 267-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000415.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 266 28 100.0 32 ............................ ATCGGCTGGGATGTTACTCAGGAAGCGCAGAT 206 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 146 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 86 28 100.0 32 ............................ CATTCAAAAGCGAGCAACAGGCCAATGCAATA 26 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCTAAGCTGCCTGTGCGGCAGTGAACTGTACGTTAAAAATGATTTTATTATGTGTNNNNNNNNNNTAAGCTGCCTGTGCGGCAGTGAACTTTTACAGTTCGATGATGAAGTTTATGCNNNNNNNNNNNNNNNNNNNCACTGCCGCACAGGCAGCTTAGAAATCCCGTCTATCGCCGCGCTTAACCGCCACCA # Right flank : A # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 146-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000674.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 145 28 89.3 32 NNN......................... ACCTGCAAATTCTTTAGCTTCAATAACATCTA 85 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 25 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : NNNNNNNNTCTAAGCTGCCTGTGCGGCAGTGAACAACTTGCTTGATGCTGGCGTTGAGCCGCTCAATTTCTAAGCTGCCTGTGCGGCAGTGAACACACTAACACCTTTACCAGACCGCGTAGGTGCTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTACGATCAATGTAAGTCAGTGGGTTCCANNNNNNNNNNCACTGCCGCACAGGCAGCTTAGAAAATATAGAGAGTTTAAAAACAGTTTACCTAACGGTTCACTGCCGCACAGGCAGCTTAGAAATTCCATTCAACCGTAACGCCCTTTATATTAACGTTCACTGCCGCACAGGCAGCTTAGAAAACCCCCCCATTTCTTGAAGTGCTGATAGTGNNNNNNNNNNCTAAGCTGCCTGTGCGGCAGTGAACTTGTGGCACAGCCACATTCTCCGGCTTTGGTATTTCTAAGCTGCCTGTGCGGCAGTGAACTCATTTCTACCTTTTGATTCTGAGGGATANNNNNNN # Right flank : G # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 492-639 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000674.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 492 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 552 28 100.0 32 ............................ TTGAGCGGCTCAACGCCAGCATCAAGCAAGTT 612 28 92.9 0 ..........................NN | ========== ====== ====== ====== ============================ ================================ ================== 3 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTAAGCTGCCTGTGCGGCAGTGAACATTTTCAGCAACACCTCCACCGTAAATATATTTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGATGTTATTGAAGCTAAAGAATTTGCAGGTTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNTATCCCTCAGAATCAAAAGGTAGAAATGAGTTCACTGCCGCACAGGCAGCTTAGAAATACCAAAGCCGGAGAATGTGGCTGTGCCACAAGTTCACTGCCGCACAGGCAGCTTAGNNNNNNNNNNCACTATCAGCACTTCAAGAAATGGGGGGGTTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTAATATAAAGGGCGTTACGGTTGAATGGAATTTCTAAGCTGCCTGTGCGGCAGTGAACCGTTAGGTAAACTGTTTTTAAACTCTCTATATTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNTGGAACCCACTGACTTACATTGATCGTAACG # Right flank : NNNNNNNNNCTCGGGTCAGTATCGGGCCGCCCCGCCTGTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNTAAAGTAATAGAAGTCATTAGCGTGTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGAGTGTTTTTTCTGACGATGTTCCTTGCTGTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNCAGCCACACCAACATACTTAAGCCCAAAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGCGGTAATCGCTCCACGATGGGATTTTGAAGTTCACTGCCGCACAGGCAGCTTAGAAAAACATCACATGCCGCAAAATATTCATGCGCTGGTTCACTGCCGCACAGGCAGCTTAGAAAGTTACGTGGCAAGTATCCGACCCGACGCTGGGGTTCACTGCCGCACAGGCAATAATCAAATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 828-677 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000674.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 827 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 767 28 89.3 35 GTT......................... AGACACGCTAATGACTTCTATTACTTTANNNNNNN 704 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 3 28 96.4 34 NNNCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCGAGTTGCAGGAAGCCAGCAACTGAGTAAATCCCCAAGCACTTACACCAGTAAGTGACCGGGATAATTGAGCGCAGCCAACATACATGCAGTTTGAAGTATGACGGGTATATCTTGATATGCTACCTGCTATTTACCCTACTCTAATACTCATAAAGTCAGTAATAAAAGATGCCATTCTCCCTGTTGTCAGTTACAAAATGCGCTTCCGCTCGCAATTTTGCTCCCCAAATAGCATCAACGCATGGTCCAGAATTTGATTATTGCCTGTGCGGCAGTGAACCCCAGCGTCGGGTCGGATACTTGCCACGTAACTTTCTAAGCTGCCTGTGCGGCAGTGAACCAGCGCATGAATATTTTGCGGCATGTGATGTTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTCAAAATCCCATCGTGGAGCGATTACCGCAATTTCTAAGCTGCCTGTGCGGCAGTGAACTTTTGGGCTTAAGTATGTTGGTGTGGCTGNNNNNNN # Right flank : CAGGCGGGGCGGCCCGATACTGACCCGAGNNNNNNNNNNTCTAAGCTGCCTGTGCGGCAGTGAACAACTTGCTTGATGCTGGCGTTGAGCCGCTCAATTTCTAAGCTGCCTGTGCGGCAGTGAACACACTAACACCTTTACCAGACCGCGTAGGTGCTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTACGATCAATGTAAGTCAGTGGGTTCCANNNNNNNNNNCACTGCCGCACAGGCAGCTTAGAAAATATAGAGAGTTTAAAAACAGTTTACCTAACGGTTCACTGCCGCACAGGCAGCTTAGAAATTCCATTCAACCGTAACGCCCTTTATATTAACGTTCACTGCCGCACAGGCAGCTTAGAAAACCCCCCCATTTCTTGAAGTGCTGATAGTGNNNNNNNNNNCTAAGCTGCCTGTGCGGCAGTGAACTTGTGGCACAGCCACATTCTCCGGCTTTGGTATTTCTAAGCTGCCTGTGCGGCAGTGAACTCATT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NNNCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 864-1071 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKS01000674.1 Yersinia pseudotuberculosis strain LFB2015M0M89/I60 NODE_1385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 864 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 924 28 100.0 32 ............................ AACATCACATGCCGCAAAATATTCATGCGCTG 984 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 1044 27 85.7 0 ...................-A.A.C... | T [1068] ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAATTTCTAAGCTGCCTGTGCGGCAGTGAACCGTTAGGTAAACTGTTTTTAAACTCTCTATATTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNTGGAACCCACTGACTTACATTGATCGTAACGTTCACTGCCGCACAGGCAGCTTAGAAAGCACCTACGCGGTCTGGTAAAGGTGTTAGTGTGTTCACTGCCGCACAGGCAGCTTAGAAATTGAGCGGCTCAACGCCAGCATCAAGCAAGTTGTTCACTGCCGCACAGGCAGCTTAGANNNNNNNNNNCTCGGGTCAGTATCGGGCCGCCCCGCCTGTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNTAAAGTAATAGAAGTCATTAGCGTGTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACTAGAGTGTTTTTTCTGACGATGTTCCTTGCTGTTTCTAAGCTGCCTGTGCGGCAGTGNNNNNNNNNNCAGCCACACCAACATACTTAAGCCCAAAA # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //