Array 1 1742640-1741660 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034770.1 Bifidobacterium breve strain BR03 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1742639 33 100.0 35 ................................. AACGCGTACGACAGGGAGACGAACCCGAAACCCGA 1742571 33 100.0 34 ................................. TGCACGACCGGGACATGAACGCCGCCCTGAACAT 1742504 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1742438 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1742370 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 1742304 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 1742237 33 100.0 35 ................................. AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT 1742169 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA G [1742155] 1742100 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1742033 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 1741966 33 97.0 36 ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1741897 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1741829 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1741761 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1741692 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGCCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACACGTTCAACGCGT # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGAGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1749828-1746891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034770.1 Bifidobacterium breve strain BR03 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1749827 33 100.0 35 ................................. TTGCGTGGCCTTCCTCCGCCGACACCACGTCCCGG 1749759 33 100.0 33 ................................. GCCGTGCTACGTCATTACAGTGATGGCAAACGT 1749693 33 100.0 36 ................................. ATCTACGGTGGGCGGCAGTCCGCGCCAACTGAACCG 1749624 33 100.0 33 ................................. CGATGATATGACGCAGAAAATATTGAACGCATA 1749558 33 100.0 33 ................................. CTGTTATCAATGAGATGACCCAGCAGACGAACC 1749492 33 100.0 33 ................................. CAACGCGATGTGGCAGCGTGAATACGCTGCACA 1749426 33 100.0 35 ................................. AGGAGCGAGTAGGCGGTGTTGTAGCGTGTCCCGTA 1749358 33 100.0 34 ................................. CATGTCCAGCGTCCGGTAGCGCATGTTGAAATAG 1749291 33 100.0 35 ................................. GCGTAGAAACTGTCCGAATTTCGACGTGGCGACTT 1749223 33 100.0 34 ................................. AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG 1749156 33 100.0 34 ................................. CTCCATTGGGCTGGATGATACATTGCATCATATC 1749089 33 100.0 33 ................................. ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC 1749023 33 100.0 35 ................................. CCGTTATCAATGAGATGACCCAGCAGACCAACCCG 1748955 33 100.0 35 ................................. AATTCAGCAACAGTCCCATTAAATCACATTAAAAC 1748887 33 100.0 36 ................................. AACGCGCTCGGCGTCACGTCGGTACCCACGGCGCAA 1748818 33 100.0 33 ................................. GAACGTGGCGTGACCGTATGGAACAAACCGGAG 1748752 33 100.0 33 ................................. AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC 1748686 33 100.0 34 ................................. TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT 1748619 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1748553 33 100.0 33 ................................. AGATTAACGACCGAGGATACGGTCTGCCGATTG 1748487 33 100.0 34 ................................. CACGTGAAACAAATCGCAACCGGGGAACGTAAAC 1748420 33 100.0 35 ................................. CAGCGCTTCGGGCACGACGGATATTGATATGCCCG 1748352 33 100.0 37 ................................. CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA 1748282 33 100.0 35 ................................. ATAAACAATAATATACCCCACGGCAGTAAGCCGTG 1748214 33 100.0 34 ................................. CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG 1748147 33 100.0 34 ................................. ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA 1748080 33 100.0 35 ................................. TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC 1748012 33 100.0 36 ................................. GCCACGCCGAACTGCATGGATGCGATCGCGCCCCGC 1747943 33 100.0 36 ................................. CCCGGCCGGTTCGGCGGGCACGTCGAGGAAAGCTAC 1747874 33 100.0 34 ................................. GCATCCTCGAACAGCGCCGCCGCATCACCAACCT 1747807 33 100.0 34 ................................. TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA 1747740 33 100.0 35 ................................. CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC 1747672 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1747604 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1747535 33 100.0 33 ................................. TAACCGTGGTGACCTCCGTGATCACGGCGATCA 1747469 33 100.0 36 ................................. CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG 1747400 33 100.0 36 ................................. AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC 1747331 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1747262 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1747194 33 100.0 35 ................................. CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG 1747126 33 100.0 35 ................................. CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA 1747058 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1746992 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1746923 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 44 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCCTGGGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCCCGTCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCACTGTGGATGATCGGCTTCTCTCCGTCCTTGAGCGTGGAGCAGGCGTCGGTGAGCATGCCGTTGGCCAGCTCGGCGTTCGGGCTCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //