Array 1 253058-252253 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRHS01000002.1 Salmonella enterica strain SW39 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 253057 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 252996 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 252935 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 252874 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 252813 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 252751 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 252648 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 252587 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 252526 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 252465 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 252404 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 252343 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 252282 29 96.6 0 A............................ | A [252255] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 271308-269190 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRHS01000002.1 Salmonella enterica strain SW39 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 271307 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 271246 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 271185 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 271124 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 271063 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 271002 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 270941 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 270880 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 270819 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 270758 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 270697 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 270636 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 270575 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 270514 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 270453 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 270392 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 270331 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 270270 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 270209 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 270148 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 270087 29 93.1 47 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTGACGAATACG 270011 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 269950 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 269889 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 269828 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 269767 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 269705 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 269644 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 269583 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 269522 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 269461 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 269400 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 269339 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 269278 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 269217 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= =============================================== ================== 35 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //