Array 1 2103-3214 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLM01000002.1 Akkermansia muciniphila strain BSM09 scaf-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 2103 33 100.0 35 ................................. TCGTCGAGCTTGGATTCATCACTTCCAAGACAGAC 2171 33 100.0 34 ................................. TTCATACGCCGTCAATTATTTTTTTCAATTTTTT 2238 33 100.0 35 ................................. TAACGGAACAAGTCCGTTATCCTGATCTCCTAACA 2306 33 100.0 37 ................................. TTCAATCATTCCACGGATGGTGACTTCCGTTCCGGGT 2376 33 100.0 34 ................................. CCTGTGACGGTTTGGAAAAGGAAAGTGCGTTGAC 2443 33 100.0 34 ................................. CGCGCACTTGTCGCCGGACCCGCGCCAGGGCCAC 2510 33 100.0 35 ................................. CGCTTCGTACATAGGAATATTGACGGGATGTACCC 2578 33 100.0 34 ................................. GGCATATCTTGGGAAGAACTTGCGCTCATGACAG 2645 33 100.0 34 ................................. CCCAGCTTCACCACCTCCGGCCTGGTGGTCTCTT 2712 33 100.0 34 ................................. CAGCTGTCCGTATGGGCGGACCCGGCCAGCGTGC 2779 33 100.0 35 ................................. GGCTCGCCCGCCACCGTAGAAGATTGGAAAGTCCG 2847 33 100.0 35 ................................. CATTCAAACCTGCGTATCAATAAATTCGGCATGCC 2915 33 100.0 34 ................................. AAATTGAGCGGAAAATTTCACTAGCCAGCCAATG 2982 33 100.0 33 ................................. TGGAAAAACACCGTTGCCATATGGTCTGCAACG 3048 33 100.0 34 ................................. AGCCTCAACTCATGCCTGCCCCAATTAGTCGCCG 3115 33 100.0 34 ................................. GGCCAGCAGATGGCTCTTGCAGCCGTCCGGTAAT 3182 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 17 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGAGTCTCCTGGATGACCGCGCCCCGGAAGATTGGACGATTGGACGGGAGGTATTGGCCAGGGTTCCGGCAGCATTGTGCCGCATTGATGAGCCATGGCGTAAACGTTCCCCGTGGAGTATATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGTCCAACCAACCCGCCAGCGAACGGGCCAGAGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGAGTGGCCAGGGAGGACGACGAGGCAGTGGACTGGGGAGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCAGTCAATTTGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACATAAGGGATAAT # Right flank : CATGACGAGGGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTACTTGGAAAAGAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCTGCCAGTTTGGTGTCTTCCACCAGTGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATATGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 113462-114140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLM01000007.1 Akkermansia muciniphila strain BSM09 scaf-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 113462 31 100.0 34 ............................... CTGAATATGTAGATTATCATCTTCAAGGGTGAAT 113527 31 100.0 34 ............................... CGTATAGTACCCAATCATGTCAGAGCCACCCCTC 113592 31 100.0 34 ............................... TGGGTATTTTTGAGCATGTCGATAATGCGGGTTG 113657 31 100.0 34 ............................... ATGTTCGGCAACTCCATTGGCATCATAGACCCTG 113722 31 100.0 33 ............................... ATCCGGCGTTTTTTGTCGAGGGCGGCCCGGAGT 113786 31 100.0 34 ............................... CACCAGCTTGCATTGCGGGCGGCCCTTGGCGTCA 113851 31 100.0 33 ............................... ATCCACAAACCGGAGACGGATAAAAAACTTTAT 113915 31 100.0 33 ............................... CGGGTTGTGTATCATAAGATTGCCGGGCATTCC 113979 31 100.0 35 ............................... CGGCAACCGGGACAGGCGAGAAGAGTAAAAAAGAG 114045 31 100.0 34 ............................... ATCGACGATAATCGGAACCTTGAAGCCGAACTCC 114110 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 11 31 99.1 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCTCGGGGCGCCTCTTCTTTTGTGGAAAACAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGAAAAGAGGGAACAGGTTAAGATATTTCTGCTTCGTGCACAGGCCCTGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTCTCCCGGTCTTCCTTCCGCCGACCCCGAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGAGCTTGACAACTATCATCTCTTTTTACGACCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGTCATAGACGCCCCGGA # Right flank : TGTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 122612-122980 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJLM01000007.1 Akkermansia muciniphila strain BSM09 scaf-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 122612 33 100.0 34 ................................. AAGGTACTCCATTCCGTCTTCTGCGTCCTGATAG 122679 33 100.0 34 ................................. TCTCATATCTATTGTCTTTCTATTGTTTGGTTTA 122746 33 100.0 36 ................................. CTGTTCCGCAATCAGGGCAATGTCTTTTTGCTGACG 122815 33 100.0 33 ................................. ATGCCCTCAAATTCATCACGGAAAATAAATCGA 122881 33 100.0 34 ................................. TCAGTGTAACAATTAAAAAAAACTCATCCCTACT 122948 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : CTCGTGGCGGTTGATTGATTGGTGTAAGTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAGACACGGGAGTTAAGGAGGATCAGACCAGTCATGAGCTATCTTATAAAAGTCGGAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAGGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGCATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCGCAAATTTATCACCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGAGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAAAAGAAAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //