Array 1 162584-160680 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKS010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5722 .24042_7_355.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162583 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162522 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162461 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162400 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162339 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162278 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162216 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162155 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162094 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162033 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161972 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161911 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161850 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161789 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161728 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161667 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161606 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161545 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161484 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161423 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161361 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161258 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161197 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161136 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161075 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161014 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160953 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160892 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160831 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160770 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160709 29 96.6 0 A............................ | A [160682] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180208-178715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKS010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5722 .24042_7_355.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180207 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180146 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180085 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180024 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179963 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179902 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179841 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179780 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179719 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179658 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179597 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179536 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179475 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179414 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179353 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179292 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179230 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179169 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179108 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179047 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178986 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178925 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178864 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178803 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178742 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //