Array 1 630598-631213 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWA01000007.1 Clostridium sporogenes strain NCTC534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 630598 30 100.0 36 .............................. AGGAGATGAATTAGAATTAGTATTAGAAGGTGATGA 630664 30 100.0 34 .............................. CAATAATTGCAAAGGAAAATAATAAGCTAAAAGG 630728 30 100.0 5 .............................. TCATT Deletion [630763] 630727 30 100.0 35 .............................. TTCATTTTGTGAAAATATATAAATGCATACAGTAT 630793 30 100.0 34 .............................. CAGAGTATTATAGGTTATGAATGGGTTACTGAAT 630857 30 100.0 5 .............................. GAAAA Deletion [630892] 630856 30 100.0 35 .............................. TGAAAATGAGCGTAGAGCAAATGAAGCAGTAGAAA 630922 30 100.0 36 .............................. AGAAACACCTTCTATTACTTTAGGAAAAGTTATAAA 630988 30 100.0 36 .............................. TTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCA 631054 30 93.3 35 .......CT..................... TTGTATTCATTTATTGTATTCTTAAATACATTCTC 631119 30 90.0 35 ........T......AG............. CCATAAATATCTAATACAGAAAACTTAGAAGATAC 631184 30 86.7 0 A....G......................GC | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 97.5 30 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : AAAAGCCTACATTCATGTGTTTACTTTGTTTTTTGTAGTAAATATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTCATATCAATAATATAGTATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAGTCACTTACTTCTTTGAGGCAACGAGAAGGAGTTTTATAAATTGAATTTTCCCAGGCGTAATAAATTTTAAAACCTATTCTAGCTATTGAAATATAAGGCTTAGAGTAGGCTTTTATTATGTATTTATAAAAAATGGGAATCGGTTGGAAAACTTTTTATAAAACCTTGTAAAATCAATAGTTGTATGATATTCTTAAAAATAAGTAATGGCTATTTTACTATG # Right flank : CAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATGATTGAACAACAACATGAGATGTATTTAAATCCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCGATTGAACAACAACATGAGATGTATTTAAATCCCGTTATGGATATCTATATACGATGTACACGAAATTGAACAACAACATGAGATGTATTTAAATGCTATATTATAATATTTGTCCTTAGCTTCTTTATATTGAACAACAACATGAGATGTATTTAAATTGTTGTTATAAGTACCTAATCTTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 631467-632084 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWA01000007.1 Clostridium sporogenes strain NCTC534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 631467 30 100.0 34 .............................. CCTTCTACGCGTTACGGTGTGTTGTAGCCTTTCG 631531 30 100.0 34 .............................. CCCGTTATGGATATCTATATACGATGTACACGAA 631595 30 100.0 34 .............................. GCTATATTATAATATTTGTCCTTAGCTTCTTTAT 631659 30 100.0 36 .............................. TGTTGTTATAAGTACCTAATCTTGTAACTACTGTTA 631725 30 100.0 36 .............................. ATGTAATATGTTCCTACTCCCAGTACCGTTCTATTA 631791 30 100.0 36 .............................. AATAAAATAGAGGTGCGGAAATCGCTATTTATTTCA 631857 30 86.7 36 G.......GT.....A.............. AATTGTCCAACTTTTCCATCTGGAATTGCTGGATTT 631923 30 86.7 35 G.......GT.....A.............. GAAGCTTCTGTACCGTAAACGATAGAGCCATCTTC 631988 30 86.7 37 G.......GT.....A.............. TTGTTAGCCATAAAATTTTATCTATATAATTAAACAT 632055 30 83.3 0 ........TT.....AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 94.3 35 ATTGAACAACAACATGAGATGTATTTAAAT # Left flank : TACTTTAGGAAAAGTTATAAAGTTGAACAATAACATGAGATGTATTTAAATTTTATTAAGTCCTCAAAATGCTTTCCATACGTTTCAGTTGAACCTTAACATGAGATGTATTTAAATTTGTATTCATTTATTGTATTCTTAAATACATTCTCGTTGAACATTAACATAGGATGTATTTAAATCCATAAATATCTAATACAGAAAACTTAGAAGATACATTGAGCAATAACATGAGATGTATTTAAGCAGAGAACTTTAATATGTAATTTGGTGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACCTATTCTAGTCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATTAAAAAACATAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTGTTATG # Right flank : CAAATTAAAATCCATGATTTTTTTCCTTCAAAGTTGTTTAGTTTTTAGAGCGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGATCTGTTACTTTTACTTATAACTGCATCATTTATATTTGGCTAATATAAAATTTATCGTAGTTTTACTTATTACCATAGTTTTGTTTCTTTGTCAAAAAGCAATGAATCATAAATTAAATTAATAAATCTAGAAGATTTAACGGTGTTAAACTTCCTATGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAACAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //