Array 1 21176-23268 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441776.1 Akkermansia sp. KLE1605 Scfld52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 21176 31 96.8 21 ..............................N NNNNNNNNNNNNNNNNNNNCC Deletion [21228] 21228 31 100.0 32 ............................... GGCGGTCTGCATGTGGCCTCGGCACAGGTAGC 21291 31 100.0 33 ............................... TTTAGCCTCAGGTTTAACGCCGTCAAAAATATC 21355 31 100.0 34 ............................... GGTCCCTTACCTCCCGTCAACAAGGTCAATATAC 21420 31 100.0 34 ............................... CTCCGCCGTCTCCCGAAGACGGCTATCTGTGCCT 21485 31 100.0 34 ............................... TCAGGCAGCAGGCAGGCAAATACGATATCCGGAC 21550 31 100.0 35 ............................... CCAGGACTTGAACGCCACCGTCAAGGCCGCCAACG 21616 31 100.0 33 ............................... GGTATGGACCTGACGAATGGGGACATCACTACG 21680 31 100.0 34 ............................... CTATGCTTCCTACATCAACGGACAGACTGTCTGG 21745 31 100.0 33 ............................... TATGGTTTAGGCCCCTTTCCCCAGCCACCGGGA 21809 31 100.0 35 ............................... GTTTCCAGTTACATCCCCTACGTTCCCTCCGGAGT 21875 31 100.0 35 ............................... AAAAGCGTTGTCAGTGTCGATGGAATGGCTAATGT 21941 31 100.0 35 ............................... CCAGCTTATCAAGGGGGCGCGGAAGGTGATGAACA 22007 31 100.0 37 ............................... CCGTTCACGGTGACGGTTTTTTTCTTGGGGAAAATCA 22075 31 100.0 33 ............................... ACTACATGCAGGTTTATTTTGTCCTGAATGGCA 22139 31 100.0 33 ............................... TCTGTACTTTCGTTACTCATAATCTTTGCATGG 22203 31 100.0 34 ............................... GGGCCTCAATCAATTCCCGTATCTGAGCATGCGT 22268 31 100.0 34 ............................... ATCCGTCCCTTGACGATGATGACGGGCCGGAAGA 22333 31 100.0 34 ............................... TCCCTCGCCGCCGCCGGGCGCCGCCGGCGCGCCG 22398 31 100.0 34 ............................... TGTCCGGGAAATGGTGAAAAACACCCCGCGCGAA 22463 31 100.0 35 ............................... AGGAGAGCATTGTTGATAAGTTGCTGCAACTGCTC 22529 31 100.0 34 ............................... AACCAGGCGGTGGAAAAAGAATTGATCATCTCCA 22594 31 100.0 35 ............................... ATCTTAATGAGTTCCATCTTTTTATTGCTTTCTAA 22660 31 100.0 33 ............................... CCGCCTGGTCCACGATTACTACGGACGAAGCTG 22724 31 100.0 34 ............................... CCCGCCAGAGACCGGAGCGCTCCCCATCAATGCC 22789 31 100.0 33 ............................... TATTCCGGGCAGTGCCTTACGTCGGAAAGCCTG 22853 31 100.0 33 ............................... CTTCGGCGATCATTCTTCCGACTCCGATGCAGC 22917 31 100.0 33 ............................... CCGGTGGGGGCCTTGCCGGGCCTGGAAGAGGCC 22981 31 100.0 34 ............................... GTGCGTACTCTCCACGACGATCCTCCCGCTTGTC 23046 31 100.0 33 ............................... GCGTTTTACGAGGCCCCACAGATACAGTCTCCT 23110 31 100.0 33 ............................... GACGGCTGGACCATGGGAAGAAATGGAAAACTC 23174 31 100.0 33 ............................... CGCTATACCGGAAATTGAAGCAGACCTTAAGGA 23238 31 96.8 0 ......T........................ | ========== ====== ====== ====== =============================== ===================================== ================== 33 31 99.8 33 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATGGCCTGCCTGGCGTCCGCAGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGGAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCACCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGGAAATTCCCGGGAAGTCGGCGATTTTCATAACCTGTTGGGGATATTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCACCCCTGCC # Right flank : CGTGGCTCAAATACTCCTTCAGCGCGGTCTTTTCCGGTCGCACCCTCACGGGTGCGTGGATTGAAACNNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACCACCGCGTCCACATGGGCCCAGCGGGTAGCCTGTCGTCGCACCCTCACGGGTGCGTGGTCATACGGATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGTAGAATGAATAAGCAACAGTTATGCTTCAACATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCCAAGGCCGGTCAGGCTTCCATGTTATCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTATCAGGTTTCCTGCGTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTATGAAGACAAGGGGTTATCCCGTTATTGCTTCCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 86592-88071 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441793.1 Akkermansia sp. KLE1605 Scfld253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================================================================== ================== 86592 31 100.0 33 ............................... TTTTCGGGCGCACTCATGCCCGGAAAAAGTATC 86656 31 100.0 34 ............................... ACTACCCCCAATCAATAACAACCATAATCATATG 86721 31 100.0 20 ............................... TNNNNNNNNNNNNNNNNNNN Deletion [86772] 86772 31 96.8 34 N.............................. TTTTGCCGCTGATGGGGTGCGTGATGGCCGGCGT 86837 31 100.0 34 ............................... CTTGAAGCTTCCGGAACAATTCAGTCACATGGCC 86902 31 100.0 34 ............................... TACGACCAGTACGCTTCAGGCATTGACATTGATA 86967 31 100.0 34 ............................... ATGTCTAGTGGGCGGCTTGGATGATGGTTTGAAT 87032 31 100.0 34 ............................... CGCTGACGGCTCCGGCCGCCGCGGTCGTCCGCGC 87097 31 100.0 34 ............................... CAGACGCCGCCCTCAAGCACGAAGGCGTCGAAAA 87162 31 100.0 34 ............................... ATTTCAAACGGCTTCTTTTTTTCAGTATTAGACA 87227 31 100.0 86 ............................... AGACACCGCTGCAAAAAGCAGAGGAAATCGCTANNNNNNNNNNNNNNNNNNNNGACACCGCTGCAAAAAGCAGAGGAAATCGCTAC 87344 31 100.0 33 ............................... AGCCAGCTTAAAGACGTTGCGAATGACGCGCTG 87408 31 100.0 33 ............................... TTTGTGAGCACCGACGATCTGTCTGCTTACATG 87472 31 100.0 33 ............................... CCGTCCCTGGCCGGGGCGCGCTGGATTATCCTT 87536 31 100.0 33 ............................... ATCCGCAAAGCCTTCAAGCGTGGCGGAAGAAGA 87600 31 93.5 20 .............................NN NNNNNNNNNNNNNNNNNNGA Deletion [87651] 87651 31 100.0 33 ............................... TGACGACCAGAATCGTCATTGAAAGCAACCCCA 87715 31 100.0 34 ............................... CGCCCGTCTTTGTTGTTATCCTGTCCCCACTGGA 87780 31 100.0 35 ............................... CACCACTTCCGGGCATCGTCCGGCCCCGGTCGGCA 87846 31 100.0 33 ............................... CTTCTGCAATTTTGCCCTCCGGGCTTCCAATTC 87910 31 100.0 34 ............................... CAACATGGCCAGATGTCCAGGATGTCCTCGTCCT 87975 31 96.8 34 ..............................T TCAAAAAAGGCTTCCAGGATCAAAAAGCTGGACA 88040 31 71.0 0 .C....T...........TA.T...AT..CA | A [88056] ========== ====== ====== ====== =============================== ====================================================================================== ================== 23 31 98.2 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : AGAAAACGATCCTTCCCTCAAAGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCGTCAAGGACCTGCTGCACTGGCTCATTGCTCGTGTGCGGTAATATGTTCCTTAGCAGAATTAAATATTGTAAATATACAAGGCCGTTCCGTTCATGGCGGAACGGCCTTCTGTTTTCCGGAACTTGTAATGAAAAGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAGTGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCTCCGGAAGTTCGGTGATTGATGTAAGTCATTGGAAAACGAAGTTTGACATATCCGATTACAAAATTTAAGGCGTGCGGAATATCGTGATGGAGGGAGGTTGGCGCAAAAAGTCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCCCACGCC # Right flank : AAGACAGAAAGAATCTGAAATGCTATTAAAACAATGAGTCCCCTCAATAAAATTTTCTAAAAACGGAGGTATTTAATAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTGCCATATTATAGTATGAAGAAATAAATATAACCCCCATTTTATCTACAAGGGCCAGTTTACAGGGAAAGGTTAAGTCCAAATTATAGGTGAAATTTAAAGGCCGGCCTATTTTCAATGAAAATAGGCCGGGCAGGAGAGATTAAAATCCGTCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTGCCATCATTGTTGACAATGAGGCTTCTATGGACTTTTGCAGAAGAATATTGACCTGCTGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCTCCTTCAAACATAAAGGGAAGGGTATTTTTTAATAATTCTGCATCTTCATCACTA # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 96587-96822 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441793.1 Akkermansia sp. KLE1605 Scfld253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 96587 33 100.0 36 ................................. GATCCTCCCTGTTCCGCTTCTTCTCTCAATTCCCGC 96656 33 100.0 33 ................................. GCCGAGAAGTCATTACCGAATACAAGCCGACGC 96722 33 100.0 35 ................................. AATCCCCAGTGCTACATCGGGGTCGACACGGGCGA 96790 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 99.2 35 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTTTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCTGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGCGCTGTTTGACATGGTCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGTAGATTGACATTCAAACATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCGAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGTCCGGACAGTCATCATCAACAACGATCCTTGGGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTGGCGACCAGCAGCGAGGCGGTTTTCACCGGAGAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACCGCTCCGTGTCGGGCATGGCGAGGTAATCGTCCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACTCGCCCATGAT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 97077-97379 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441793.1 Akkermansia sp. KLE1605 Scfld253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 97077 33 97.0 34 N................................ TGTCCGGACAGTCATCATCAACAACGATCCTTGG 97144 33 100.0 34 ................................. TGGCGACCAGCAGCGAGGCGGTTTTCACCGGAGA 97211 33 100.0 34 ................................. CGCTCCGTGTCGGGCATGGCGAGGTAATCGTCCA 97278 33 100.0 33 ................................. TCGCCCATGATGTCCTGGCGCACGACCACCCTG 97344 32 87.9 0 .......................-.....T.CG | CT,C,C [97364,97368,97373] ========== ====== ====== ====== ================================= ================================== ================== 5 33 97.0 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : CGTTGGGGCAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACGATCCTCCCTGTTCCGCTTCTTCTCTCAATTCCCGCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACGCCGAGAAGTCATTACCGAATACAAGCCGACGCGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAACAATCCCCAGTGCTACATCGGGGTCGACACGGGCGAGTCGCTCTCCGCAAGGAGGGCGTGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GATAATTAAAAAGCACCCCGGATCAGGTAAGTCCGGGGTGCTTTTTTGTTTTCTACCGCAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGCTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCCGTATCCCGGAACACGCGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCTACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11576-12049 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441794.1 Akkermansia sp. KLE1605 Scfld263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 11576 31 100.0 33 ............................... CCCAGACCGGGCCGACGCCCTTGTGATGGCCTG 11640 31 100.0 35 ............................... TCCCAGCCCGCTCCTACTCCCAAGCCGGGAGAAAA 11706 31 93.5 21 .............................NN NNNNNNNNNNNNNNNNNNAAA Deletion [11758] 11758 31 100.0 35 ............................... CAAACCACAGCCACGCATCCGGAGTCAGGGGGTCG 11824 31 100.0 33 ............................... AGGCCGCAACTTACGCGCCGCGGCCTGAATGGA 11888 31 100.0 35 ............................... CGCTCCCCATGAAGGGGTCGAGAATTCGTGATTTT 11954 31 100.0 34 ............................... ACCGCGGGGAAGGGAACCCCCTCCCGCTCCTCAT 12019 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 99.2 32 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCTTTTTTCTTCATTTCACAGGCTTTCCGCTCCAAGAACGGAAAGCCTTTTTTATGCCGGAATGTTGTCATGCACGGCGGTCCCTCGTGCCGCACGGTCGGGAATTGTCCGGAAAACGAATGTGGGAGGTCCCATGGAATCATGGAAGGGGGCCTTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGGACGGAATACTATGGCCTCTGCATCGCAGCAGGTGCGGGTTGTCGGAACGGCTGGAACGACTCCGTGGTGGAACCTTCTTCCGTCCTTCTCACTCCCCGCGCCAACCCCTAGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCATGGAATATGCATCTCCGCGGACAGGTTGGCGCAAAATACCTTTTGCGTGCCTGACTCTCAATATGTATATCTCCCCGCC # Right flank : CAANNNNNNNNNNNNNNNNNNNNTCGCACCCTCACGGGTGCGTGGATTGAAACAACCGCACCCCGCGGGAGTCGATAATCACCTGAGGGACGACAGGATAGTTGATCAGTGTTGAATTAAGGTTGAAATCCGTTGGAAGCTTGAAAACAAAAGAGGTTGCAAGCGATGCCGAGCACAAGTAGGTATCTGATCAAAACGGAGGGCAAAACACGGGTCAATGACAAGTATCTGATCAAAACGAATCACCCAGGAAAGATCTATGCAGATGGTGTGCAGACGCCCTGCACAGATATGGGTCCACGCTGCAAGAAATCGAAATCGCCAAGGATTACCCGACGAAAAATTAAAAATGTCCGGATAGACTGGACTGTGAGGTTAATCAGAGCGATGTGTCGGTCATGGACGACAACATCACATCGAGACTAATCAATTATCATCAACAACGCCGGGACCTCATGGACCTGCTCAATGATGCCATAGACAAATTGCATGCCATGCGA # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59741-60929 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441799.1 Akkermansia sp. KLE1605 Scfld323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================================================================== ================== 59741 33 100.0 36 ................................. TTTTGATTTTATGATAAGCGGGAGTTTTTTCTGGTA 59810 33 100.0 33 ................................. ACGATTCCCCGCGGGGATGTTGGTCCTCAGGGA 59876 33 100.0 35 ................................. TCTTGCCGTCGCCAGGGCAGCTATGGACCCGGACG 59944 33 100.0 33 ................................. AATCAGGAGAACTAAAAAATCTAAAAAACGGTT 60010 33 100.0 84 ................................. NNNNNNNNNNNNNNNNNNNNGCACCTCACACGAGGTGCGTGGATTGAAACCGGCGGCCCTGGCCAGGCGCACCCGTGGGTGGCC 60127 33 100.0 34 ................................. GGGGTTCACATGATGGTCGGAGTCTGGATACTCT 60194 33 100.0 34 ................................. TTCCAACATGAGGGAACGCATGTTGGCGACGAAT 60261 33 100.0 34 ................................. CGCCCCTGTCGTCAACGGGTCCGGCGTCATGGTC 60328 33 93.9 17 ...............................NN NNNNNNNNNNNNNNNNN Deletion [60378] 60378 33 97.0 34 N................................ ATGTTTGGTTCAGGCGGTTTTGCGGTCGGTGACG 60445 33 100.0 34 ................................. CCTATGTTGTCGGAAGCGACGGACATCATTGCCC 60512 33 100.0 34 ................................. CTCTAAATTTATCTGTACTATCGTAAGACATGAG 60579 33 100.0 34 ................................. TGTTCTTGGCAATGAGCGGATGGCCCAACGGGCA 60646 33 100.0 33 ................................. ATCGCCCATGAAGACGGCGCGCTTGAAATTGGC 60712 33 100.0 85 ................................. NNNNNNNNNNNNNNNNNNNNGCACCTCACACGAGGTGCGTGGATTGAAACCGCCTCTGCTTCATCACGGTCCACGTCCTCAACTC 60830 33 97.0 34 ...............................C. CCCCCATTTTTGAGCGGCCTGATGGGCTGTCAAC 60897 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================================================================== ================== 17 33 99.3 39 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAATACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCCCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATTCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTTACCGGAAAGGAAACTGGACGCGCTTAAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAGGAAGGAACATGCCCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CTATTTGTGATTCACTCATTGGCGGCTTCTTGCAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCTCACACGAGGTGCGTGGATTGAAACAGCGCGCCGTGGCTGGTCGCCGAAGAAGGCAGGGGTCGCACCTCACACGAGGTGCGTGGATTGAAACCAGACAGGTGAC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 61317-62258 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV441799.1 Akkermansia sp. KLE1605 Scfld323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 61317 33 100.0 34 ................................. AGCGCGCCGTGGCTGGTCGCCGAAGAAGGCAGGG 61384 33 100.0 34 ................................. CAGACAGGTGACATCCACCTGCATGGACCAGATG 61451 33 100.0 34 ................................. CGCATTGCCTTGTAAAGCATGCCTCCCGGCCTCC 61518 33 100.0 34 ................................. CTGGGGCATCACGGGGACCTGGGCCACGCGCGGG 61585 33 93.9 16 ...............................NN NNNNNNNNNNNNNNNN Deletion [61634] 61634 33 93.9 34 NN............................... CAGGGTTTCCAGTTCCGCCGCCACCTGGGAGGCG 61701 33 100.0 35 ................................. ATCAGGTTTCTGGCTTCATAGATTTTCTGTTTCAG 61769 33 100.0 34 ................................. TGAAGAAACTTGCCTGCATTATGAGGAAGAATAT 61836 33 100.0 36 ................................. CATGATGCACGGGTCCAGGTCCGGGAGCTTCATGCA 61905 33 100.0 35 ................................. CATTTGCCCTGTTGAATGTAAATATCGCCGTCCGA 61973 33 97.0 18 ................................N NNNNNNNNNNNNNNNNNN Deletion [62024] 62024 33 97.0 34 N................................ CACGTGGAACATTTATTCAGATATGCCGGAAAAT 62091 33 100.0 35 ................................. ACTGATGGGCGTCCAGGCGGAGTCCCCGTCCGGGA 62159 33 100.0 34 ................................. CGGCAAATCTTTGAGAGGTATCTGCTCGTCATGG 62226 33 97.0 0 ..T.............................. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.6 32 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : ACGTCCTCAACTCGTCGCACCTCACACGAGGTGCGTGGATTGAACCCCCCCATTTTTGAGCGGCCTGATGGGCTGTCAACGTCGCACCTCACACGAGGTGCGTGGATTGAAACTATTTGTGATTCACTCATTGGCGGCTTCTTGCAGTCGCACCTCACACGAGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTCATGACTGCCGTGTACCAGGATGCGGCGGGACGTCGCACCTCACACGAGGTGCGACTAAACCATTCGGGGAGGCGTTGGAATATCCATCAGAGCGGAGAGCAGAAAGAAGAAAACCGTATTTCCCTGACGTGATTATGTTCGCGATGGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGCCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCGCCGCTTCCATGAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTTCGCATCCGCGCTTCCACCCACGGGATATTTTCCCTTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATTCGGGCGGCCCACGCATTTTTGCGCTCCACAACCCGTACCCTG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //