Array 1 27159-30971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGS010000101.1 Klebsiella quasivariicola isolate SB6095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27159 29 100.0 32 ............................. GTGATGCGTATGGTAGGGTTCTAAACTGGTAT 27220 29 100.0 32 ............................. CGGCACTGATAAGGAGACTGCAGCGTCTGGCT 27281 29 100.0 32 ............................. CAACGTCGAACGCTTTCGTTAAATCCTCAAAG 27342 29 100.0 32 ............................. TCTCCACTCATATTGCAACCAACATTTACAGA 27403 29 100.0 32 ............................. AGTATCTTAACGGCCTTTATCAGCCACCAGAT 27464 29 100.0 33 ............................. GTGTTCGCCTCCCGGCGTGCGATATCCATCCAC 27526 29 100.0 32 ............................. TCCGGGCATTCGTCGAGAAGACGAAAAAGAAT 27587 29 100.0 32 ............................. GTATAAAGACGCCGAAGGCTATTAGCGGGAAT 27648 29 100.0 32 ............................. CGTAGCCTCCATCTGGTCGTAAATCTTGCGGG 27709 29 100.0 32 ............................. ATATTTTTTACCGGGATCTCGATACCCCAGCA 27770 29 100.0 32 ............................. TCCAGCCCTTCCGGTGTGATGTCCCACTCTGA 27831 29 100.0 32 ............................. GGTAACCGGGTCGTCGTCCAGGTCCTCGTCGG 27892 29 100.0 32 ............................. GTTGTGATAGAAACACCTTTTGTTAATGGGGA 27953 29 100.0 32 ............................. GTAGCGATGTGCTGGCGCAACTCCGGCAGCTT 28014 29 100.0 32 ............................. CTGTTTCATCCGCGCATTGACACGGAGCTGCA 28075 29 100.0 32 ............................. CGCCTCTAAATATTATAGTATCGCAGACGTCA 28136 29 100.0 32 ............................. GTCACTGGCCGCGCTATTTCCGGGGGTAAGCT 28197 29 100.0 32 ............................. GCGATCTCTTTTGTGCGGGGCGCCGACGCTGC 28258 29 100.0 32 ............................. TGTACCGCGTCAAGCCCGTTTTCGCGAATATC 28319 29 100.0 32 ............................. GTCGAAAGCCCGAATGGCGATATCGACGCTAT 28380 29 100.0 32 ............................. CCGGGATGACAAGTTCCGGCCCATTGAACCCG 28441 29 100.0 32 ............................. GAAGCTGAAGATATAGCAGTCGACGGGGCTGT 28502 29 100.0 32 ............................. CCGTGATCATCTCCCGCGGGGAAATGGTCGGA 28563 29 100.0 32 ............................. AGCAATAGCAATGGCCTGCGCCTTAATTAACG 28624 29 100.0 32 ............................. CCATTTTTAGTAGCAATAACCTGCAATGACAG 28685 29 100.0 32 ............................. AGTTTGTTCGTCGCATTAATGGCGTGAACGTT 28746 29 100.0 32 ............................. AATGCGCCGGCCGAGGTGCTGGTGCGCGAGGT 28807 29 96.6 32 ............................A CCGTTATCAGCCAGGATACCAGGTTCTCACGC 28868 29 100.0 32 ............................. GCAGATCACCAGCCTACAGGCCATCTTCCAGA 28929 29 100.0 32 ............................. CAGGCGGGGCAACCTCGACGCAGCGCGCCGGA 28990 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCGGGCCAGTT 29051 29 100.0 32 ............................. GCGGGCATCTCTCGTGCCGGTCGCACCGCGCC 29112 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 29173 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 29234 29 100.0 32 ............................. CCTCGTCTCCAACCGGCTGCTCGTTGAAGTTG 29295 29 96.6 32 ............T................ GATCAGATGTACCCCATCTTCAGTTGGGGATG 29356 29 100.0 32 ............................. AGTCAAGACCGGTACCGCGGCGGATATCCTGA 29417 29 100.0 32 ............................. GCGGTTACGTTGTGCTGGATATCTCCCTGAAA 29478 29 100.0 32 ............................. AGGGGCTGACACGTGCCGGCCAACTGTCCCCC 29539 29 100.0 32 ............................. GATGAAATTTAGGTGCGCACCACTTTTCATAT 29600 29 96.6 32 ............................T GCAGTAACCAGCCGCTCAGCTGCCGATTTCTG 29661 29 100.0 32 ............................. GCAAAAGATGACTGGTTAATGTCACCGCGCAT 29722 29 100.0 32 ............................. CCACGGTGTCAGCGTGCAACTCGTCGTGATGC 29783 29 96.6 33 .............A............... CGCATGCAGAAAACCGCGACGCGACTTTTAGGC 29845 29 100.0 32 ............................. TAATCAAACGACGCATTACCGGGGTTTCAGAA 29906 29 100.0 32 ............................. CAGGCGCTGCAGAAAATGTACCAGGACGATCT 29967 29 100.0 32 ............................. CAAATGATTCGCGCGACTAAAGTTGCAGCCCG 30028 29 100.0 32 ............................. AAAAAACTGGTCTTGAAGGGCTTGACCCGAAA 30089 29 100.0 32 ............................. TCGCCGTACCAGAAGGATATTTGTTTTAATCT 30150 29 100.0 32 ............................. GTTCGCACTGTTATCCAATCGTGGAGGAAATT 30211 29 100.0 32 ............................. TTAGTAAACGTTGCACCCATGCGGCCAAGTGT 30272 29 100.0 32 ............................. GCTCAAATAACAGACGAACGTTTGGCAAAAAT 30333 29 100.0 32 ............................. TCAATACATTTGAAGCTGCTTTTGCTCCTTTT 30394 29 100.0 32 ............................. CGCTCTAAATTTTGGGCTTCTGGATATGATGT 30455 29 100.0 32 ............................. GTTCACGATCTCTTTGTCGGCTTCCTCGATAA 30516 29 100.0 32 ............................. AAATCATCAACGGCTCCAACACGACCGTTAAC 30577 29 100.0 32 ............................. ATTTCCATTCGCCCCGGTGTTGCTTGCACAGT 30638 29 100.0 32 ............................. TGGCACGGCAACCGCGAAACCGTGGGTTTTCG 30699 29 100.0 32 ............................. AATACAACGACGTCCTGACGGATAAAGGGATG 30760 29 100.0 32 ............................. GAATGGTCACAATTCAAGGGGGTGCTGGCGCT 30821 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 30882 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 30943 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : TGCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAACGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 173846-174482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGS010000106.1 Klebsiella quasivariicola isolate SB6095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 173846 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 173907 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 173968 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 174030 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 174091 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 174152 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 174213 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 174274 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 174335 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 174396 27 92.9 33 .............A...-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 174456 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTCCCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1013-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHGS010000003.1 Klebsiella quasivariicola isolate SB6095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1012 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 951 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 890 28 100.0 33 ............................ TATCGCCCGGGCTCGCAGGCGCAGGACTATATC 829 28 100.0 33 ............................ TACCAGTTACAGAAAGGGGATTGCCTCGAAGTT 768 28 100.0 33 ............................ TATATTGGCTATATCCCGATTTATACAGGCATG 707 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 646 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 585 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 524 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 463 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 402 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 341 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 280 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 219 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 158 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 97 28 71.4 0 ........T.....T......C.TAGGG | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATATAAAGAACGACTCTGTATCGATCTGGCTTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTTATTGCCGCCGATATCAATGAGCTAATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAAGATTCGGTTGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : GAAGTTGCGATTAAGTGGTCCGCAGCTCCCGATATGACGCCCCAAACCGTCCTTTATCGACGTCCTGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //