Array 1 326414-325834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPK010000003.1 Acetanaerobacterium sp. MSJ-12 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 326413 34 100.0 35 .................................. GATATGCTCGCCTACAAAAAGCGCGCCAACCCCCG 326344 34 100.0 35 .................................. GCAAAATCGCTTGAATTTGATCGCCAAATAGTGCG 326275 34 100.0 33 .................................. ACGTTATGACCAGCGATGTGCAGTTTCCCGCGC 326208 34 100.0 35 .................................. GAGACAACAGGTGTAGTGATTGTGTACGACACATA 326139 34 100.0 34 .................................. ACCTGTCCATTCTGAAAGCTATCCTTGACCCGAC 326071 34 100.0 35 .................................. ATAATTAATAATTTCAATAGAACCATCTACTTCTT 326002 34 100.0 35 .................................. ACCCCCGCCGCCTTGGCCCGCAGAAACTCCGCCTC 325933 34 97.1 34 ...................T.............. TGGGGCCGTCTACCATATCGAAAAGGTCGAGAAT 325865 32 85.3 0 ..........-.............A-.C.A.... | ========== ====== ====== ====== ================================== =================================== ================== 9 34 98.0 35 GTCTCGCTCCCACGCGGAGCGAGTGGATTGAAAT # Left flank : GAGTTCCTGCCGGTGGACATCTACAAGTCCGGCGCCACCGACTACCGGTTGGAGGACGGCAAGATTCGGCTGCCCTTCAACTGCCTGCGCGGACTGGGCGACACCGCCGCCATCGCCCTGGAGGAGACCATCAAAGAGGGGGGCTTCATCTCCATCGACGAGATCCAGACCCGTTCGGGCATCTCCAAGACGGTGGCGGACAGCCTCAAGGAGTGCGGCGCCTTCGGCGACCTGCCCCAGTCCAGCCAGATGACCTTCTTCTGATCGCTCCGCCGTTTGTGCGCGCTTCTACTCGGCAGTCCGCCCCTCTCTGAGGCGGGCTGCTTTTTGTGCGAACCCCAAGCACACATCGTTTTCCCGGGACCTTCGCACCGAAAAATTGGGTAGCAGAGTGGGGGAAAGGGGAAGGAATGGGAGAATAGATCTTGCAGTTTGACATTTGTTTGTGGAAGTTGTATTGTTGTGGTGAAAGAATACCTGCCTTTTTGTAGGTGTTTGCT # Right flank : CTTTCCGTCGATTTGAGAATTGCCTTACCCCCCTGCCTTTTAGAGGGTGGCAGGGGACATCCTATTCCCCACAAAGCACTTTCCCATTTCCCTCCATCAAAAAAGAGAGAGCCAGACAGCACCACCTGTCTGGCTCTCTTTTACTTCTTCTTGCGGGGCTGGTTTTGCCCTCGTTGTCCGCCCTGTCCAGCGGGTTTTCCATTGGCCGCGGGCCGTCCGCCCGGCTGTCTAGTTGCGGGCTGCCTGGGCGGAGCTGGGCGCTCTCTTCGGGGCGGCCGGGGCTGTTTGGGGGTGGGCTCCAGGATTTCCATGGGGTAGGGGTGGTTTTTGACCACCGGGATCTCCTGCTTGATGAGCTTTTGGATGTCCTTGAGGTAGGGGATCTCGTCGAACATGCAAAAGGAGATCGCCGTGCCGCTGAGCCCTGCGCGGCCGGTGCGGCCGATGCGGTGGACATAGGTCTCCGGCTCGTTGGGCAGGTCGTAGTTGATGACGTGGGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCCCACGCGGAGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 119375-119077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPK010000004.1 Acetanaerobacterium sp. MSJ-12 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 119374 33 100.0 34 ................................. ATTTTCGGTCCACCCAGCCTACTGAGTACCCCGC 119307 33 100.0 31 ................................. CAAACATTTCGGTGAAAAACCCGTGGGGATT 119243 33 100.0 35 ................................. ACCTCACGGGGGCCGGGGGCAACCCGCACTACATC 119175 33 97.0 32 ................................G CTTTTCCGGGTTCCCCGAGAGGAATACCCGGG 119110 33 90.9 0 .......................A......T.C | A [119083] ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.6 33 GTCGCACCCCGCGCGGGTGCGTGGATTGAAATA # Left flank : TCGAGTACACCGGCTTGCGACCGGGCGAGAAGCTCTATGAGGAACTGCTGATGGACGAAGAGGGGATGAAAGAGACCCCCTACGAAAAAATTTTCATCGGCCGGCCGATCGACATCTGTCCCGACGACCTCTGGCGCTCCCTCGACGAGATGCGCCCCCTGGCGTACAGCAACCAGCCGGACAAGGTGATTGCCGAGCTGCAAAAGATCGTGCCCACCTTCACCCCCACCCCCAACCAACACAGTTGAGAGAAGAGCGGCTTGCCGAAGAGATGTCGGCAAGCCGCTCTTTTGCGTCTGGGTGGAGAGCCGGGAGATGTGGAGGCTTTGGTGCGAACCCCAAGCGCACAGGGATTTGCCGGGAGGTTCGCACCAAAAAATGTCCGCATATTGCCGGGGAAAAGGAGAAGACGGCGGACAGAGAAGATTGATTTGACATGGTTTTGTGAAAAGAGGTATAGTAGAAGTGCAGATTGACGCAGGTTTTTGTGCCAATTTGCT # Right flank : CTCGAACTGCCATGTCGTCAGCTCGGAGGATGTAGCTATATCCCGTTTGGGTGCGCATGACAATAGCAAATTATCTCTATGTAACTGCCCGCTTTTCCCCATCCCTAAAAAAGAGAGCCTCTAGGTATTCCCAGAGGCTCTCTTTTTCACTCTATGCCCTCTAAAAGGCAGTTATCCCTCTCCGCCATTCTGTTTTCGGGTGCGGTGGATGAGATAGATGGCGGACAGCAGCAAGCTAACCCCCAGCAGGAGGAGCGCTGCCAAGTCCCAGGAACAGGCGGTGTGGACGGCGCAGAAAACGGCCGCAGCCGCCAAAGCGGTGAGGACAGCAAAATCACAAGTTTTCACGGGTACTTTCCTCCTCTCTATCCAGTTGGCACTTGCGCGCCAGGAGATAGGCCAGGGCGATTGCCGTCAGCGCCAGCGCGAGCCAGTGCACCCAGCAATCTGCCGGCTGCCGGTGGCCGCGGCCACCCGGTTCGCCGGTATAGGGCCCATTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 277578-278285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPK010000004.1 Acetanaerobacterium sp. MSJ-12 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================================================================================================================================================================================================================== ================== 277578 32 87.5 230 .......T......AG......T......... TCGGTGAACAGTCATTTGTCCTTATACTGATGTCCATCCCGCTTGGTTCTTACCATCCGTACCCCCGTACCGACAAAAGAGCGCGAAATCCCCGTACGCCTTCTTGTCGCTCTCGCCGATTATTACCAAAGGACTACTGACTTTATTCTAGGCCGCGATAAGAACTCTTGAGTCGCCTATCTGCCTTGCATCCCGCCCCGCACCAGTCCCCATTCACCCCGGCTGCTCGC 277840 32 75.0 42 .G..T....C.A....AA.C.C.......... TGACATAAGACAACAGAAAATACAAAGCCAAGCCAAAATAGT T [277846] 277915 32 96.9 37 .......T........................ CCCGCGTCTCCTACCCCCGCGAGGCCACCGGCAACGT G [277927] 277985 32 100.0 35 ................................ AATCAGCTCCCGTGCCTGTTCCATGACCGCCTCGT 278052 31 96.9 38 .........-...................... GAGGACGTCAATTTCCGGCGTCCGATCCCCACGTTGGT 278121 32 100.0 34 ................................ TGCTGGGCGGTAAGGCCTGGCCGTCGGAGCACAT 278187 31 84.4 35 G....C....T.....-..C............ CTATACCTCAAAATGTGGCCTTTGGTGGTTCCTTT T [278191] 278254 31 84.4 0 G....C.........-.T.C............ | A [278259] ========== ====== ====== ====== ================================ ====================================================================================================================================================================================================================================== ================== 8 32 90.6 65 CTCGCTCCCACGCGGAGCGAGTGGATTGAAAT # Left flank : GGGTGCAAATGGGGAGAGAAAACACCGCACTGGTTTGCGGCTCCCTTCCTCCAACGGATGATTTGTTTATCGAAAATCCGGCTTGCGGACGGCGAAAGTCCTCCTATCTGCCCGCGGAAAAACAGTATACACCTATTTTCTATTGCCGTATTGATTTTACTATTTCACGATAGTAAAAAGGCGATTTGCGCAAACCCATACCGCGAAATCCTTTTGTCGCCCTCCCTCTCTCGCAGAGTTAGGATACGCTCAACGCTGTAAAAAAACAAGATGATTAAAATCCCCACGTCCCGTATGCATCCCTCTTTTTCAGCCGAAAATATCCCCTCAACCGCCGCCTGCCGACCACTTCCCTTAGGTCATCTGAAAAACCGGCAGCCATTTCCCCCATCTTGCCGTTGACTTTGTGGGCAGGCCACCGTAAAATCAGCTTATAGAAATTCGTTTCCCATGTGAGAGGAATAGATTAAAAGCCAAATATAAAGAATTTATTTATGGGT # Right flank : TTCTCCGAACTGCCCCCACTTGTTGCGGTGGTTTAAGTCGCACCCCACGCGGGGGACTGCACCTGCGGCGGCGAGATTGGGAGCGGCCTTGCGCTGGGGGAAGTGCATGTCCCCATTCCGCCGGGCGGACCGGCCACATCTGTGCCCCCTCCCCCACACGCAGGCCGCCTTTCCCGGTGAACGCGGCAACTGCAAGCACTGCCGGGCGGAGCAGTCACCGGTTTTGGAAGGACCGCGGGGTCAGCGGCACACAGTGCGAAAGGCGCATCAGCCCCTCCTCGGCAATCACAGCTGCGGGCATCCCACCGCCTCCCCCGCCCGATTGGAAGCATTTGCTTCCCCCCCAAAAAACGAGGAGACCCGCTGACCGGCAGAGGAGGTACAAGGTGGATTTTTCAAGAGAAGAGCTGACGGAAGCCAAGCGACAAATCGATTCGACCCTGCACAAGTTGCGGGAGACGGTGAAAACGCTGGCCGCAAAGGAGCGCCCCGAGCGGTAC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.53, 5:0, 6:0.25, 7:-3, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCTCCCACGCGGAGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 1104-1334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPK010000012.1 Acetanaerobacterium sp. MSJ-12 Scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1104 33 100.0 34 ................................. ACAGCCCTGAGGGCATTGGCGCTGAGATCGACAC 1171 33 84.8 31 ....T.....GT.T....A.............. CCGCCTCAAGCGCGGTTATCACCATCACCAC 1235 33 84.8 34 .........CT..TA.................T CCATGGTGTCCTCCAAGGCCGACGCTGGTTGCCA 1302 33 81.8 0 .........C..A........C.AC.......C | ========== ====== ====== ====== ================================= ================================== ================== 4 33 87.9 33 GTCGCACCCTACGCGGGTGCGTGGATTGAAATA # Left flank : ATGGCGGCCGTGGCCGTATACACTGCCTGCCGCCGTCGCCAGACCGATGCGGATGCCGAAAAGATGGGGGACGAGCGCCCTGGTCTCCTCGGCAAAGACCTCTTTTTCTACAGCGTGGTCTCCGCCCTGACAGCCCTGCTCTACCTGTTGCGGGGCTGCGCCCTCGACGGGGTCGCCCTGCTGGCCGTGGCGGCCGCCATAGTCGCCAGCGCCATTGTCGTGTCCCGGCGAGAGGCAGAGGAAAAAAGTGAACACTAATTGAAAAGGAGCGCCTTTTAGGCGCTCCTTTTTTACGGGCTGGGGCTTTTTTACAATGCTACGGCTTCCGGTGCGAAGGGCAAGTGGACGGGGTTTCCCCAGAACCTTCGCACCGCGTGTGGGCAGTTGCAGGGGAGGAGTGACAGCGGTAAAGGGGGATTTGCCGCTGCAAATTGACAGAGCATTGGGGAAGCGGTATAGTAAAGAAGAAAGAGGATGAAATGTTTTTGTGCTTTGTTGCT # Right flank : CCTCCCAAAGCACACTCCCGTCACCATGGTACGTGGATAAACTTTCTAAGAAGTAGTAATCACAGCGGCGAGACAGTTTGTCGCATCCCCCCGCGGTTTCACCCTCCGAAACGGCGAGAATTCCACATTTGCGCGCAGCCCTACCATGCTGCCACCTTTTCCGCCTGACAGTATCCTTCGAGTTTTTGCCCCGCACGAGAGGGGATGACACAGAGGGGGTTGCCCCCACTTGCCCACCCAGCTCAAAGGGAGGCAGGCCGCTTGCCTTTGCACCGTGAGCAGGTGCGAGGCGCACATAAAAAGAGCCCTCCGGCCGGAGGGCTCTTTTTTTATAGCTGGGCGAAAATCCGCGCGCCCTTTGTGTTCAGCCATCCCCACATCGCCAGACAGAGGAGGACGGCGACCACAGTGGCCACAGCCGTGACCAAGACCATGGACAGGTGCAGGGCGAAACCGAGGCCGATGAACGCCGCGGCCAGAATGGGGGTGGTGAAGTACCC # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32433-32804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPK010000014.1 Acetanaerobacterium sp. MSJ-12 Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 32433 34 100.0 34 .................................. ACGCATGGGAAGAGTACGATCTTGCGGGCGGTGC 32501 34 100.0 33 .................................. TGCGAATACCGCATACGAAGAGGACAAAAACGG 32568 34 100.0 33 .................................. TGGCCGTGGCTGCCTTAGTGGTGGCCTCCGGGG 32635 34 94.1 34 ......C....A...................... TGCTTACCACTCTGCCCTCATCCGTGTGGAAAAC 32703 34 91.2 34 ......CT.........A................ CGCCTTGCTGCAGGGAGCACTGTTTCGGTACTCC 32771 34 91.2 0 ......C..........AA............... | ========== ====== ====== ====== ================================== ================================== ================== 6 34 96.1 34 GTCTCCTCCTCGCGTAGGGGGAGTGGATTGAAAT # Left flank : CGCTGCCCTCCGGCCAGGCATCGGCCTGGGCGAGCGGGCTCCCCGACATGTCTTTGGCGCGGGAAGACGGCGGGACAGCGTTCGCCAGACACCCGGTGACAAGGCAATCGCACCTGTTGCGGTGGAGACTGTTGGGAAGGGGCCTTTCCCCACCCCGGCGGCTGTTTTGGCGGCTGCTGTCGGGGGGAGGGGCAACGTTTCAGGCGCACCCCTTCCCCTTCCCTGGGCTGAAGTGGGAAGGCGGCTGCGCAAAGGAAAGGGAAGAGAGCTGGGCGGTGAGTGCCCGGCTCTTTTTCTGTGGCAAGGTCGTCTCCCCTTGCGCGGCAGGTGCGAAGGGCAAGCAGACAGAAAACGCCCGGGCCCTTCGCACCGGGAAAACGCCACAAGCAGGGTGAAAAAGGGGTCGGTCAAGGGATAGGAGGACAGGGCGGTTGACAGCAGATTGGGGAAGTTGTATGGTAAAGACAATCAAACAGTCTCCTTTTTTGGAGATGTTTGCT # Right flank : TCCGCTAGTTTGGTAATGCTTCCCCCTACTCCCGGCTTTCAAGTCCTCTTCTGTCTTGAAAAAGTGGGTGGCAATCGGGCTCTCGGTGGCGCGCCCCTCCCCGCACGAGAAGGGCAACTCGCATCGCGGCTTTGGCCTCGGCGCTTTTGATGGTTTCGCCTTCCCCCTCCCGGGGAGCAATCCCTAGCTGCCGCTCCAAGGCCGGTGGGCGGTGCCGCGACCCCCACCATCGAAAACACCCACCAAACCCAAAGAGAGAGGGGAAACAGGCCGTTTCCCCTCTCTCTTTTTGCCGACAGCCGGCCCTAGTCCACCACGCCGGGGGTGCGGCCGATGCCCACCACCTCGCTGACCAGGCGGCGCCAGGTGGCGCAGCCGACGATGCCGTCGGCGCTCAGGCCGTTGCGCCGCTGGTAGTTCACCACAGCGGTGCGGGTGTTCTGGCCAAAGTAGCCGTCCAGCGAGCCCGCCCGGTAGCCCAGGGCGTTGAGGGCGTCCTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTCCTCGCGTAGGGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //