Array 1 191869-190260 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIM01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1773 1773_3_length_422069_cov_62.0631, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 191868 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 191807 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 191746 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 191685 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 191612 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 191551 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 191490 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 191429 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 191368 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 191307 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 191246 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 191185 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 191124 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 191063 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 191002 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 190941 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 190880 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 190819 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 190716 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 190655 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 190594 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 190533 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 190472 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 190411 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 190350 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 190289 29 96.6 0 A............................ | A [190262] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209253-208127 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIIM01000003.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 1773 1773_3_length_422069_cov_62.0631, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209252 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 209191 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 209130 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 209069 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 209008 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 208947 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 208886 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 208825 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 208764 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 208703 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 208642 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 208581 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 208520 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 208459 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 208398 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 208337 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 208276 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 208215 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 208154 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //