Array 1 130113-128617 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRT01000004.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 73 NODE_4_length_339735_cov_29.3653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 130112 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 130051 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 129990 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 129929 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 129868 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 129807 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 129746 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 129685 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 129624 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 129563 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 129502 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 129441 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 129380 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 129318 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 129257 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 129196 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 129135 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 129074 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 129013 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 128952 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 128890 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 128829 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 128768 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 128707 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 128646 29 100.0 0 ............................. | A [128619] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147617-146369 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRT01000004.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 73 NODE_4_length_339735_cov_29.3653, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147616 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 147555 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 147494 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 147433 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 147372 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 147311 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 147250 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 147189 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 147128 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 147067 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 147006 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 146945 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 146884 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 146823 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 146762 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 146701 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 146640 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 146579 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 146518 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 146457 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 146396 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //