Array 1 219789-216339 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACHW01000035.1 Vibrio cholerae TM 11079-80 VIF.Contig101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 219788 28 100.0 32 ............................ TTAACCAGCAATTAAAGCAGGTTCCACGCAAT 219728 28 100.0 32 ............................ TGACTATAAACTTTGGACGGGTCGCCACTCTC 219668 28 100.0 32 ............................ TTATCCAAGGGATAAAAAAATGCAAAACTTTA 219608 28 100.0 32 ............................ ATTACTTTCAAAAATGGGTATGCGAAAAATGC 219548 28 100.0 32 ............................ TCCCACTCTGAAACCATTTTATTGAAGTGCTC 219488 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 219428 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 219368 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 219308 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 219248 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 219188 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 219128 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 219068 28 100.0 32 ............................ TGTCTGCAAATTATCTTTTGCAAGCTGCAGGC 219008 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 218948 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 218888 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 218828 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 218768 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 218708 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 218648 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 218588 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 218528 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 218468 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 218408 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 218348 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 218288 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 218228 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 218168 28 96.4 33 ...........T................ AGATAAGCGTTGTTTAAGCGGCTGCGGAACACG 218107 28 96.4 32 ...........T................ ACGCTATTTGGCGAATTCGTCCACGTAAAAAC 218047 28 96.4 32 ...........T................ TTCGCTTAGTTGAGTTTGAGCAAGATAAACAA 217987 28 96.4 32 ...........T................ ATTTCCTTGATGTGCTTGATTTGATCAGCTTT 217927 28 96.4 32 ...........T................ GTTAAGCGTGGGTTATACATTGTTAATGGTCG 217867 28 96.4 32 ...........T................ ATAATACAACAAAACTCGAGTAACTCTAGCAA 217807 28 96.4 32 ...........T................ ACCAGTGGTGAGCTGAAGCATTGAAGTACCTT 217747 28 96.4 32 ...........T................ GCTTCGATCAAGTCAAAATCGAACTGGTTTGT 217687 28 96.4 32 ...........T................ AGCTCATCTAACTCTTGCCAAACTTCTGGCTT 217627 28 96.4 32 ...........T................ ATTTGAGCGCCGAGTTTAAACGATAGTTCATA 217567 28 100.0 32 ............................ GTTGAAATACCATGCTTTTTTTGATCTCGAAT 217507 28 100.0 32 ............................ TTGCTGGCTGGTTATGTGATGCCAAACATGTT 217447 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 217387 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 217327 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 217267 28 100.0 32 ............................ ATTCGAACTGCGGCATTCAGCATGGTTTTACC 217207 28 100.0 32 ............................ AGTAACAAAAAACTCGCCAAACGCATGGCGGA 217147 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 217087 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 217027 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 216967 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 216907 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 216847 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 216787 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 216727 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 216666 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 216606 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 216546 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 216486 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 216426 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 216366 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAACTTTTCAAGGTAATCACGATCTGATCATGAAGTTAAAAATATGAGAAACTCGTACATGATTATCATTGAGCAGCTAAAAAAAGTGAAAGATACCCGTTCGCATATCAACCAAGTGTATCCTGTTATGGAAGTGGCTTTCTTGGTCATAACCGCCATGATTTGTGGTCAAAATAAGTGGACTGATATTAAGGATTTCGGCGAAGGAAATATCGAGTGGTTGCGTGAGTATCTCCCCTACGACAATGGTCTCCCCACTCGGCATAATATTGCCGCGATAATGAGAACTGTTGTACCAGAGACGCTCTTGGAAGCGATGGTAGGCTGGGTCAATTTGCACAGAGAAAAGCATGCTCAGCCCATAATCAGCGTTGATGGGAAGGTTCTAAAAGGAGCGAAAGCAAGCAAACAAGAACACCCTCTCTATATGGTTTCGGCATTTGACGTAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //