Array 1 429291-430477 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPZ01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL C7-150 NODE_2_length_665024_cov_39.5774_ID_3438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429291 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429352 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429413 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429474 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429535 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429596 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429657 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429718 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429779 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429840 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429901 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429962 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 430023 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 430084 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 430145 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430206 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430267 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430328 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430389 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430450 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446648-448327 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBPZ01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL C7-150 NODE_2_length_665024_cov_39.5774_ID_3438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446648 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446709 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446770 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446831 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 446892 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 446953 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 447014 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 447075 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 447136 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 447197 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 447258 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 447319 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447381 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447443 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447504 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447565 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447626 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447687 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447748 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447809 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447870 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447932 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 447993 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 448054 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 448115 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 448176 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 448237 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 448298 29 93.1 0 A..............A............. | A [448324] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //