Array 1 65518-63553 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHL01000021.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F72H3 NODE_21_length_88719_cov_12.5485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65517 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65456 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65395 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65334 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65273 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65212 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65151 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65089 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 65028 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64967 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64906 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64845 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64784 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64723 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64662 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64601 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64540 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64479 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64418 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64357 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64296 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64234 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64131 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64070 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64009 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63948 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63887 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63826 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63765 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63704 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63643 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63582 29 96.6 0 A............................ | A [63555] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83142-81649 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBHL01000021.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain F72H3 NODE_21_length_88719_cov_12.5485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83141 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 83080 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 83019 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82958 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82897 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82836 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82775 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82714 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82653 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82592 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82531 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82470 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82409 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82348 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82287 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82226 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82164 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 82103 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 82042 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81981 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81920 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81859 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81798 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81737 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81676 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //